Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rhsA and MCAODC_26960 are separated by 26 nucleotides MCAODC_26960 and tnp-ISAs1 are separated by 214 nucleotides
MCAODC_26955: rhsA - type IV secretion protein Rhs, at 2,113,258 to 2,114,592
rhsA
MCAODC_26960: MCAODC_26960 - Immunity protein of metallopeptidase 4 toxin, at 2,114,619 to 2,114,840
_26960
MCAODC_26965: tnp-ISAs1 - ISAs1 family transposase, at 2,115,055 to 2,116,191
tnp-ISAs1
Position (kb)
2114
2115 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2113.628 kb on - strand, within rhsA at 2113.647 kb on + strand, within rhsA at 2113.684 kb on + strand, within rhsA at 2113.685 kb on - strand, within rhsA at 2113.724 kb on + strand, within rhsA at 2113.837 kb on - strand, within rhsA at 2113.848 kb on + strand, within rhsA at 2113.969 kb on + strand, within rhsA at 2113.970 kb on - strand, within rhsA at 2114.047 kb on + strand, within rhsA at 2114.047 kb on + strand, within rhsA at 2114.047 kb on + strand, within rhsA at 2114.048 kb on - strand, within rhsA at 2114.092 kb on + strand, within rhsA at 2114.098 kb on + strand, within rhsA at 2114.173 kb on + strand, within rhsA at 2114.174 kb on - strand, within rhsA at 2114.174 kb on - strand, within rhsA at 2114.175 kb on + strand, within rhsA at 2114.175 kb on + strand, within rhsA at 2114.238 kb on + strand, within rhsA at 2114.711 kb on + strand, within MCAODC_26960 at 2114.723 kb on + strand, within MCAODC_26960 at 2114.836 kb on + strand at 2115.039 kb on - strand at 2115.192 kb on + strand, within tnp-ISAs1
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 2,113,628 - rhsA MCAODC_26955 0.28 +0.8 2,113,647 + rhsA MCAODC_26955 0.29 -0.7 2,113,684 + rhsA MCAODC_26955 0.32 +0.3 2,113,685 - rhsA MCAODC_26955 0.32 -1.3 2,113,724 + rhsA MCAODC_26955 0.35 +0.1 2,113,837 - rhsA MCAODC_26955 0.43 -2.6 2,113,848 + rhsA MCAODC_26955 0.44 -1.0 2,113,969 + rhsA MCAODC_26955 0.53 -0.3 2,113,970 - rhsA MCAODC_26955 0.53 -0.3 2,114,047 + rhsA MCAODC_26955 0.59 -0.0 2,114,047 + rhsA MCAODC_26955 0.59 +0.3 2,114,047 + rhsA MCAODC_26955 0.59 -0.4 2,114,048 - rhsA MCAODC_26955 0.59 +0.1 2,114,092 + rhsA MCAODC_26955 0.62 -1.3 2,114,098 + rhsA MCAODC_26955 0.63 -3.0 2,114,173 + rhsA MCAODC_26955 0.69 +0.0 2,114,174 - rhsA MCAODC_26955 0.69 -0.1 2,114,174 - rhsA MCAODC_26955 0.69 +1.5 2,114,175 + rhsA MCAODC_26955 0.69 -0.0 2,114,175 + rhsA MCAODC_26955 0.69 +0.9 2,114,238 + rhsA MCAODC_26955 0.73 -0.5 2,114,711 + MCAODC_26960 0.41 -1.1 2,114,723 + MCAODC_26960 0.47 -0.8 2,114,836 + -0.4 2,115,039 - +0.1 2,115,192 + tnp-ISAs1 MCAODC_26965 0.12 +1.8
Or see this region's nucleotide sequence