Strain Fitness in Escherichia coli ECRC101 around MCAODC_22410

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_22395 and MCAODC_22400 are separated by 126 nucleotidesMCAODC_22400 and ssb are separated by 10 nucleotidesssb and MCAODC_22410 overlap by 4 nucleotidesMCAODC_22410 and MCAODC_22415 are separated by 200 nucleotides MCAODC_22395: MCAODC_22395 - hypothetical protein, at 1,241,531 to 1,241,755 _22395 MCAODC_22400: MCAODC_22400 - PerC family transcriptional regulator, at 1,241,882 to 1,242,154 _22400 MCAODC_22405: ssb - single-stranded DNA-binding protein, at 1,242,165 to 1,242,575 ssb MCAODC_22410: MCAODC_22410 - hypothetical protein, at 1,242,572 to 1,242,823 _22410 MCAODC_22415: MCAODC_22415 - DNA primase, at 1,243,024 to 1,244,424 _22415 Position (kb) 1242 1243Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1241.717 kb on - strand, within MCAODC_22395at 1241.717 kb on - strand, within MCAODC_22395at 1241.730 kb on - strand, within MCAODC_22395at 1241.733 kb on - strandat 1241.792 kb on - strandat 1241.795 kb on - strandat 1241.795 kb on - strandat 1241.798 kb on + strandat 1241.799 kb on - strandat 1241.799 kb on - strandat 1241.799 kb on - strandat 1241.884 kb on - strandat 1241.906 kb on + strandat 1241.907 kb on - strandat 1241.907 kb on - strandat 1241.928 kb on - strand, within MCAODC_22400at 1241.928 kb on - strand, within MCAODC_22400at 1241.928 kb on - strand, within MCAODC_22400at 1241.928 kb on - strand, within MCAODC_22400at 1241.928 kb on - strand, within MCAODC_22400at 1241.943 kb on + strand, within MCAODC_22400at 1241.944 kb on - strand, within MCAODC_22400at 1241.944 kb on - strand, within MCAODC_22400at 1242.109 kb on - strand, within MCAODC_22400at 1242.109 kb on - strand, within MCAODC_22400at 1242.149 kb on + strandat 1242.150 kb on - strandat 1242.150 kb on - strandat 1242.177 kb on - strandat 1242.177 kb on - strandat 1242.279 kb on + strand, within ssbat 1242.279 kb on + strand, within ssbat 1242.611 kb on + strand, within MCAODC_22410at 1242.686 kb on + strand, within MCAODC_22410at 1242.787 kb on - strand, within MCAODC_22410at 1242.901 kb on - strandat 1242.948 kb on + strandat 1242.948 kb on + strandat 1242.949 kb on - strandat 1242.949 kb on - strandat 1242.950 kb on + strandat 1243.037 kb on - strandat 1243.037 kb on - strandat 1243.775 kb on - strand, within MCAODC_22415at 1243.793 kb on - strand, within MCAODC_22415at 1243.793 kb on - strand, within MCAODC_22415at 1243.793 kb on - strand, within MCAODC_22415at 1243.793 kb on - strand, within MCAODC_22415at 1243.815 kb on - strand, within MCAODC_22415

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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1,241,717 - MCAODC_22395 0.83 +2.7
1,241,717 - MCAODC_22395 0.83 -0.4
1,241,730 - MCAODC_22395 0.88 -0.9
1,241,733 - -0.1
1,241,792 - -0.5
1,241,795 - +0.6
1,241,795 - -1.6
1,241,798 + -0.4
1,241,799 - -0.4
1,241,799 - -0.9
1,241,799 - +0.5
1,241,884 - -1.8
1,241,906 + +1.2
1,241,907 - +0.8
1,241,907 - -0.3
1,241,928 - MCAODC_22400 0.17 -2.3
1,241,928 - MCAODC_22400 0.17 -2.2
1,241,928 - MCAODC_22400 0.17 -0.5
1,241,928 - MCAODC_22400 0.17 -0.7
1,241,928 - MCAODC_22400 0.17 -1.5
1,241,943 + MCAODC_22400 0.22 +0.4
1,241,944 - MCAODC_22400 0.23 +1.6
1,241,944 - MCAODC_22400 0.23 -0.6
1,242,109 - MCAODC_22400 0.83 -0.2
1,242,109 - MCAODC_22400 0.83 +0.3
1,242,149 + +1.6
1,242,150 - -1.7
1,242,150 - -0.2
1,242,177 - +0.4
1,242,177 - +1.5
1,242,279 + ssb MCAODC_22405 0.28 -0.8
1,242,279 + ssb MCAODC_22405 0.28 +0.3
1,242,611 + MCAODC_22410 0.15 -2.8
1,242,686 + MCAODC_22410 0.45 -1.6
1,242,787 - MCAODC_22410 0.85 -1.8
1,242,901 - -0.7
1,242,948 + -1.2
1,242,948 + +0.2
1,242,949 - -2.1
1,242,949 - -0.6
1,242,950 + +1.0
1,243,037 - +0.7
1,243,037 - +0.1
1,243,775 - MCAODC_22415 0.54 -0.3
1,243,793 - MCAODC_22415 0.55 -0.6
1,243,793 - MCAODC_22415 0.55 -1.7
1,243,793 - MCAODC_22415 0.55 -2.3
1,243,793 - MCAODC_22415 0.55 -0.8
1,243,815 - MCAODC_22415 0.56 -2.1

Or see this region's nucleotide sequence