Strain Fitness in Escherichia coli ECRC101 around MCAODC_22110

Experiment: Bas61

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMCAODC_22100 and MCAODC_22105 are separated by 15 nucleotidesMCAODC_22105 and MCAODC_22110 are separated by 7 nucleotidesMCAODC_22110 and MCAODC_22115 overlap by 4 nucleotidesMCAODC_22115 and MCAODC_22120 are separated by 11 nucleotidesMCAODC_22120 and MCAODC_22125 are separated by 11 nucleotides MCAODC_22100: MCAODC_22100 - Phage minor tail protein, at 1,200,655 to 1,201,077 _22100 MCAODC_22105: MCAODC_22105 - Tail tube protein, at 1,201,093 to 1,201,833 _22105 MCAODC_22110: MCAODC_22110 - Tail tube terminator protein, at 1,201,841 to 1,202,236 _22110 MCAODC_22115: MCAODC_22115 - Tail completion protein Z, at 1,202,233 to 1,202,811 _22115 MCAODC_22120: MCAODC_22120 - phage tail protein, at 1,202,823 to 1,203,176 _22120 MCAODC_22125: MCAODC_22125 - DNA-packaging protein FI, at 1,203,188 to 1,203,586 _22125 Position (kb) 1201 1202 1203Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1201.002 kb on + strand, within MCAODC_22100at 1201.047 kb on + strandat 1201.201 kb on - strand, within MCAODC_22105at 1201.230 kb on + strand, within MCAODC_22105at 1201.512 kb on - strand, within MCAODC_22105at 1201.534 kb on - strand, within MCAODC_22105at 1201.534 kb on - strand, within MCAODC_22105at 1201.597 kb on - strand, within MCAODC_22105at 1201.658 kb on + strand, within MCAODC_22105at 1201.707 kb on + strand, within MCAODC_22105at 1201.851 kb on + strandat 1201.855 kb on + strandat 1201.856 kb on - strandat 1201.856 kb on - strandat 1201.856 kb on - strandat 1201.856 kb on - strandat 1201.856 kb on - strandat 1201.863 kb on + strandat 1201.863 kb on + strandat 1201.952 kb on + strand, within MCAODC_22110at 1201.953 kb on - strand, within MCAODC_22110at 1202.069 kb on - strand, within MCAODC_22110at 1202.094 kb on + strand, within MCAODC_22110at 1202.208 kb on - strandat 1202.228 kb on - strandat 1202.243 kb on - strandat 1202.316 kb on + strand, within MCAODC_22115at 1202.317 kb on - strand, within MCAODC_22115at 1202.517 kb on + strand, within MCAODC_22115at 1202.518 kb on - strand, within MCAODC_22115at 1202.663 kb on - strand, within MCAODC_22115at 1202.663 kb on - strand, within MCAODC_22115at 1202.804 kb on - strandat 1202.811 kb on + strandat 1202.811 kb on + strandat 1202.811 kb on + strandat 1202.811 kb on + strandat 1202.811 kb on + strandat 1202.811 kb on + strandat 1202.812 kb on - strandat 1202.812 kb on - strandat 1202.812 kb on - strandat 1202.812 kb on - strandat 1202.812 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
remove
1,201,002 + MCAODC_22100 0.82 -0.1
1,201,047 + -0.6
1,201,201 - MCAODC_22105 0.15 +1.2
1,201,230 + MCAODC_22105 0.18 +1.2
1,201,512 - MCAODC_22105 0.57 +0.4
1,201,534 - MCAODC_22105 0.60 -0.9
1,201,534 - MCAODC_22105 0.60 +0.2
1,201,597 - MCAODC_22105 0.68 +0.9
1,201,658 + MCAODC_22105 0.76 +0.7
1,201,707 + MCAODC_22105 0.83 +0.8
1,201,851 + -0.6
1,201,855 + -2.3
1,201,856 - +1.3
1,201,856 - -0.3
1,201,856 - -1.1
1,201,856 - +0.8
1,201,856 - -0.1
1,201,863 + +0.7
1,201,863 + -0.2
1,201,952 + MCAODC_22110 0.28 -0.9
1,201,953 - MCAODC_22110 0.28 +0.3
1,202,069 - MCAODC_22110 0.58 -1.2
1,202,094 + MCAODC_22110 0.64 +0.9
1,202,208 - +1.5
1,202,228 - +0.3
1,202,243 - -0.6
1,202,316 + MCAODC_22115 0.14 -0.0
1,202,317 - MCAODC_22115 0.15 +1.9
1,202,517 + MCAODC_22115 0.49 -0.7
1,202,518 - MCAODC_22115 0.49 +2.3
1,202,663 - MCAODC_22115 0.74 +1.2
1,202,663 - MCAODC_22115 0.74 -1.9
1,202,804 - -1.2
1,202,811 + -0.7
1,202,811 + -2.7
1,202,811 + -0.9
1,202,811 + -0.7
1,202,811 + +3.3
1,202,811 + -1.2
1,202,812 - -1.4
1,202,812 - +2.1
1,202,812 - +1.8
1,202,812 - -0.6
1,202,812 - -0.1

Or see this region's nucleotide sequence