Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliF and fliG overlap by 8 nucleotides fliG and fliH overlap by 8 nucleotides fliH and fliI overlap by 1 nucleotides
MCAODC_19680: fliF - flagellar M-ring protein FliF, at 766,984 to 768,642
fliF
MCAODC_19685: fliG - flagellar motor switch protein FliG, at 768,635 to 769,630
fliG
MCAODC_19690: fliH - flagellar assembly protein FliH, at 769,623 to 770,309
fliH
MCAODC_19695: fliI - flagellum-specific ATP synthase FliI, at 770,309 to 771,682
fliI
Position (kb) 768
769
770 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 767.665 kb on - strand, within fliF at 767.739 kb on + strand, within fliF at 767.740 kb on - strand, within fliF at 767.757 kb on + strand, within fliF at 767.757 kb on + strand, within fliF at 767.758 kb on - strand, within fliF at 767.868 kb on + strand, within fliF at 767.868 kb on + strand, within fliF at 768.016 kb on - strand, within fliF at 768.052 kb on - strand, within fliF at 768.052 kb on - strand, within fliF at 768.055 kb on + strand, within fliF at 768.055 kb on + strand, within fliF at 768.055 kb on + strand, within fliF at 768.056 kb on - strand, within fliF at 768.081 kb on + strand, within fliF at 768.274 kb on - strand, within fliF at 768.335 kb on + strand, within fliF at 768.391 kb on - strand, within fliF at 768.411 kb on - strand, within fliF at 768.440 kb on + strand, within fliF at 768.440 kb on + strand, within fliF at 768.627 kb on + strand at 768.789 kb on + strand, within fliG at 768.845 kb on - strand, within fliG at 768.860 kb on + strand, within fliG at 768.922 kb on + strand, within fliG at 769.168 kb on - strand, within fliG at 769.240 kb on + strand, within fliG at 769.599 kb on + strand at 769.599 kb on + strand at 769.618 kb on + strand at 769.618 kb on + strand at 769.618 kb on + strand at 769.619 kb on - strand at 769.622 kb on + strand at 769.622 kb on + strand at 769.622 kb on + strand at 769.622 kb on + strand at 769.622 kb on + strand at 769.622 kb on + strand at 769.622 kb on + strand at 769.623 kb on - strand at 769.623 kb on - strand at 769.623 kb on - strand at 769.623 kb on - strand at 769.623 kb on - strand at 769.623 kb on - strand at 769.827 kb on - strand, within fliH at 769.943 kb on + strand, within fliH at 769.944 kb on - strand, within fliH at 769.962 kb on - strand, within fliH at 770.147 kb on + strand, within fliH at 770.147 kb on + strand, within fliH at 770.147 kb on + strand, within fliH at 770.147 kb on + strand, within fliH at 770.164 kb on + strand, within fliH at 770.165 kb on - strand, within fliH at 770.165 kb on - strand, within fliH at 770.307 kb on + strand at 770.307 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 767,665 - fliF MCAODC_19680 0.41 -0.9 767,739 + fliF MCAODC_19680 0.46 +0.2 767,740 - fliF MCAODC_19680 0.46 +0.5 767,757 + fliF MCAODC_19680 0.47 -0.9 767,757 + fliF MCAODC_19680 0.47 -0.7 767,758 - fliF MCAODC_19680 0.47 +0.8 767,868 + fliF MCAODC_19680 0.53 +1.0 767,868 + fliF MCAODC_19680 0.53 -0.6 768,016 - fliF MCAODC_19680 0.62 -2.4 768,052 - fliF MCAODC_19680 0.64 -0.3 768,052 - fliF MCAODC_19680 0.64 +4.0 768,055 + fliF MCAODC_19680 0.65 -0.4 768,055 + fliF MCAODC_19680 0.65 -2.4 768,055 + fliF MCAODC_19680 0.65 -0.4 768,056 - fliF MCAODC_19680 0.65 +1.8 768,081 + fliF MCAODC_19680 0.66 +0.3 768,274 - fliF MCAODC_19680 0.78 -0.6 768,335 + fliF MCAODC_19680 0.81 +0.7 768,391 - fliF MCAODC_19680 0.85 +2.2 768,411 - fliF MCAODC_19680 0.86 +1.2 768,440 + fliF MCAODC_19680 0.88 +0.1 768,440 + fliF MCAODC_19680 0.88 +1.2 768,627 + +2.1 768,789 + fliG MCAODC_19685 0.15 +1.5 768,845 - fliG MCAODC_19685 0.21 -2.8 768,860 + fliG MCAODC_19685 0.23 +0.3 768,922 + fliG MCAODC_19685 0.29 -1.4 769,168 - fliG MCAODC_19685 0.54 -1.8 769,240 + fliG MCAODC_19685 0.61 -1.0 769,599 + -0.1 769,599 + -0.5 769,618 + -0.8 769,618 + -0.5 769,618 + -1.0 769,619 - +2.8 769,622 + -0.3 769,622 + +0.6 769,622 + -0.5 769,622 + +1.1 769,622 + +1.0 769,622 + +2.9 769,622 + +0.4 769,623 - +0.1 769,623 - -0.4 769,623 - -1.2 769,623 - +2.0 769,623 - +0.4 769,623 - -1.4 769,827 - fliH MCAODC_19690 0.30 +3.0 769,943 + fliH MCAODC_19690 0.47 -0.4 769,944 - fliH MCAODC_19690 0.47 +0.4 769,962 - fliH MCAODC_19690 0.49 +0.9 770,147 + fliH MCAODC_19690 0.76 +1.4 770,147 + fliH MCAODC_19690 0.76 +1.3 770,147 + fliH MCAODC_19690 0.76 -0.3 770,147 + fliH MCAODC_19690 0.76 -0.2 770,164 + fliH MCAODC_19690 0.79 -0.1 770,165 - fliH MCAODC_19690 0.79 -2.1 770,165 - fliH MCAODC_19690 0.79 +0.8 770,307 + -0.2 770,307 + +0.4
Or see this region's nucleotide sequence