Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_19515 and MCAODC_19520 are separated by 150 nucleotides MCAODC_19520 and MCAODC_19525 are separated by 54 nucleotides MCAODC_19525 and MCAODC_19530 overlap by 1 nucleotides
MCAODC_19515: MCAODC_19515 - Putative tail fiber component of prophage CP-933T, at 736,455 to 738,545
_19515
MCAODC_19520: MCAODC_19520 - phage tail protein, at 738,696 to 739,061
_19520
MCAODC_19525: MCAODC_19525 - phage major tail tube protein, at 739,116 to 739,628
_19525
MCAODC_19530: MCAODC_19530 - phage tail protein, at 739,628 to 740,812
_19530
Position (kb) 738
739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 737.735 kb on + strand, within MCAODC_19515 at 737.738 kb on + strand, within MCAODC_19515 at 737.738 kb on + strand, within MCAODC_19515 at 737.739 kb on - strand, within MCAODC_19515 at 737.739 kb on - strand, within MCAODC_19515 at 737.828 kb on + strand, within MCAODC_19515 at 737.874 kb on - strand, within MCAODC_19515 at 738.112 kb on + strand, within MCAODC_19515 at 738.113 kb on - strand, within MCAODC_19515 at 738.258 kb on + strand, within MCAODC_19515 at 738.313 kb on - strand, within MCAODC_19515 at 738.313 kb on - strand, within MCAODC_19515 at 738.313 kb on - strand, within MCAODC_19515 at 738.329 kb on + strand, within MCAODC_19515 at 738.637 kb on - strand at 738.643 kb on - strand at 738.670 kb on + strand at 738.670 kb on + strand at 738.670 kb on + strand at 738.671 kb on - strand at 738.671 kb on - strand at 738.671 kb on - strand at 738.769 kb on - strand, within MCAODC_19520 at 738.777 kb on - strand, within MCAODC_19520 at 738.849 kb on - strand, within MCAODC_19520 at 738.849 kb on - strand, within MCAODC_19520 at 738.849 kb on - strand, within MCAODC_19520 at 738.940 kb on + strand, within MCAODC_19520 at 739.107 kb on + strand at 739.108 kb on - strand at 739.108 kb on - strand at 739.110 kb on + strand at 739.111 kb on - strand at 739.111 kb on - strand at 739.111 kb on - strand at 739.111 kb on - strand at 739.115 kb on - strand at 739.235 kb on - strand, within MCAODC_19525 at 739.235 kb on - strand, within MCAODC_19525 at 739.237 kb on + strand, within MCAODC_19525 at 739.256 kb on - strand, within MCAODC_19525 at 739.334 kb on - strand, within MCAODC_19525 at 739.357 kb on + strand, within MCAODC_19525 at 739.358 kb on - strand, within MCAODC_19525 at 739.361 kb on - strand, within MCAODC_19525 at 739.485 kb on - strand, within MCAODC_19525 at 739.485 kb on - strand, within MCAODC_19525 at 739.485 kb on - strand, within MCAODC_19525 at 739.676 kb on - strand at 739.687 kb on - strand at 739.720 kb on + strand at 739.720 kb on + strand at 739.721 kb on - strand at 739.721 kb on - strand at 739.723 kb on - strand at 739.723 kb on - strand at 739.754 kb on + strand, within MCAODC_19530 at 739.820 kb on - strand, within MCAODC_19530 at 739.855 kb on + strand, within MCAODC_19530 at 739.950 kb on + strand, within MCAODC_19530 at 739.951 kb on - strand, within MCAODC_19530 at 739.951 kb on - strand, within MCAODC_19530 at 739.951 kb on - strand, within MCAODC_19530 at 739.951 kb on - strand, within MCAODC_19530 at 739.951 kb on - strand, within MCAODC_19530 at 739.965 kb on + strand, within MCAODC_19530
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 737,735 + MCAODC_19515 0.61 +0.6 737,738 + MCAODC_19515 0.61 +0.1 737,738 + MCAODC_19515 0.61 +0.2 737,739 - MCAODC_19515 0.61 -0.8 737,739 - MCAODC_19515 0.61 -0.3 737,828 + MCAODC_19515 0.66 -1.6 737,874 - MCAODC_19515 0.68 +1.8 738,112 + MCAODC_19515 0.79 -2.9 738,113 - MCAODC_19515 0.79 +1.0 738,258 + MCAODC_19515 0.86 -1.5 738,313 - MCAODC_19515 0.89 +3.1 738,313 - MCAODC_19515 0.89 +1.0 738,313 - MCAODC_19515 0.89 +1.5 738,329 + MCAODC_19515 0.90 -0.6 738,637 - -0.1 738,643 - -1.7 738,670 + +1.0 738,670 + -1.1 738,670 + +0.4 738,671 - +0.1 738,671 - -0.2 738,671 - +0.4 738,769 - MCAODC_19520 0.20 +0.1 738,777 - MCAODC_19520 0.22 -0.9 738,849 - MCAODC_19520 0.42 -2.1 738,849 - MCAODC_19520 0.42 -1.2 738,849 - MCAODC_19520 0.42 -1.5 738,940 + MCAODC_19520 0.67 +2.5 739,107 + -0.0 739,108 - +0.9 739,108 - +0.5 739,110 + +2.9 739,111 - -0.6 739,111 - -1.3 739,111 - +0.3 739,111 - -0.3 739,115 - +0.6 739,235 - MCAODC_19525 0.23 +1.8 739,235 - MCAODC_19525 0.23 +1.0 739,237 + MCAODC_19525 0.24 -0.2 739,256 - MCAODC_19525 0.27 +0.4 739,334 - MCAODC_19525 0.42 +1.0 739,357 + MCAODC_19525 0.47 -0.0 739,358 - MCAODC_19525 0.47 +0.7 739,361 - MCAODC_19525 0.48 +0.4 739,485 - MCAODC_19525 0.72 +0.9 739,485 - MCAODC_19525 0.72 -1.2 739,485 - MCAODC_19525 0.72 -1.0 739,676 - +0.9 739,687 - +0.1 739,720 + +1.2 739,720 + -0.1 739,721 - -0.4 739,721 - +0.9 739,723 - +0.8 739,723 - -0.3 739,754 + MCAODC_19530 0.11 -1.0 739,820 - MCAODC_19530 0.16 -0.9 739,855 + MCAODC_19530 0.19 -0.3 739,950 + MCAODC_19530 0.27 +0.8 739,951 - MCAODC_19530 0.27 +0.9 739,951 - MCAODC_19530 0.27 +0.0 739,951 - MCAODC_19530 0.27 -0.4 739,951 - MCAODC_19530 0.27 -0.2 739,951 - MCAODC_19530 0.27 +0.1 739,965 + MCAODC_19530 0.28 +0.1
Or see this region's nucleotide sequence