Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt speG and ynfC are separated by 2 nucleotides ynfC and MCAODC_17630 are separated by 71 nucleotides MCAODC_17630 and ynfE are separated by 198 nucleotides
MCAODC_17620: speG - spermidine N1-acetyltransferase, at 385,255 to 385,815
speG
MCAODC_17625: ynfC - YnfC family lipoprotein, at 385,818 to 386,564
ynfC
MCAODC_17630: MCAODC_17630 - DUF1161 domain-containing protein, at 386,636 to 386,941
_17630
MCAODC_17635: ynfE - Putative dimethyl sulfoxide reductase chain YnfE, at 387,140 to 389,566
ynfE
Position (kb) 386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 385.710 kb on + strand, within speG at 385.819 kb on + strand at 385.819 kb on + strand at 385.945 kb on - strand, within ynfC at 386.090 kb on - strand, within ynfC at 386.257 kb on - strand, within ynfC at 386.371 kb on - strand, within ynfC at 386.564 kb on + strand at 386.580 kb on - strand at 386.734 kb on - strand, within MCAODC_17630 at 386.785 kb on + strand, within MCAODC_17630 at 386.785 kb on + strand, within MCAODC_17630 at 386.785 kb on + strand, within MCAODC_17630 at 386.786 kb on - strand, within MCAODC_17630 at 386.786 kb on - strand, within MCAODC_17630 at 386.864 kb on + strand, within MCAODC_17630 at 386.909 kb on - strand, within MCAODC_17630 at 386.940 kb on - strand at 386.942 kb on + strand at 386.943 kb on - strand at 386.943 kb on - strand at 386.955 kb on - strand at 386.990 kb on + strand at 386.991 kb on - strand at 386.991 kb on - strand at 386.998 kb on - strand at 387.008 kb on + strand at 387.139 kb on + strand at 387.270 kb on + strand at 387.355 kb on + strand at 387.402 kb on - strand, within ynfE at 387.417 kb on + strand, within ynfE at 387.458 kb on - strand, within ynfE at 387.458 kb on - strand, within ynfE at 387.529 kb on + strand, within ynfE at 387.530 kb on - strand, within ynfE at 387.550 kb on + strand, within ynfE at 387.603 kb on + strand, within ynfE at 387.604 kb on - strand, within ynfE at 387.607 kb on + strand, within ynfE at 387.607 kb on + strand, within ynfE at 387.608 kb on - strand, within ynfE at 387.755 kb on + strand, within ynfE at 387.755 kb on + strand, within ynfE
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 385,710 + speG MCAODC_17620 0.81 -0.2 385,819 + -0.5 385,819 + +1.5 385,945 - ynfC MCAODC_17625 0.17 +0.2 386,090 - ynfC MCAODC_17625 0.36 -2.1 386,257 - ynfC MCAODC_17625 0.59 -0.7 386,371 - ynfC MCAODC_17625 0.74 -2.6 386,564 + -1.0 386,580 - +1.2 386,734 - MCAODC_17630 0.32 -0.0 386,785 + MCAODC_17630 0.49 -1.3 386,785 + MCAODC_17630 0.49 -0.1 386,785 + MCAODC_17630 0.49 -0.1 386,786 - MCAODC_17630 0.49 -0.7 386,786 - MCAODC_17630 0.49 -0.8 386,864 + MCAODC_17630 0.75 -1.1 386,909 - MCAODC_17630 0.89 -0.6 386,940 - -1.8 386,942 + +2.2 386,943 - +1.5 386,943 - -0.6 386,955 - -1.0 386,990 + -1.3 386,991 - -1.2 386,991 - -2.3 386,998 - -0.0 387,008 + -0.4 387,139 + +0.9 387,270 + -2.3 387,355 + +0.0 387,402 - ynfE MCAODC_17635 0.11 +0.6 387,417 + ynfE MCAODC_17635 0.11 -0.4 387,458 - ynfE MCAODC_17635 0.13 -0.8 387,458 - ynfE MCAODC_17635 0.13 +0.6 387,529 + ynfE MCAODC_17635 0.16 +1.4 387,530 - ynfE MCAODC_17635 0.16 +2.2 387,550 + ynfE MCAODC_17635 0.17 +0.3 387,603 + ynfE MCAODC_17635 0.19 +2.2 387,604 - ynfE MCAODC_17635 0.19 +1.3 387,607 + ynfE MCAODC_17635 0.19 +0.6 387,607 + ynfE MCAODC_17635 0.19 +0.2 387,608 - ynfE MCAODC_17635 0.19 -2.9 387,755 + ynfE MCAODC_17635 0.25 +0.2 387,755 + ynfE MCAODC_17635 0.25 -0.8
Or see this region's nucleotide sequence