Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nleG7 and MCAODC_17275 are separated by 273 nucleotides MCAODC_17275 and nleG2-4 are separated by 290 nucleotides nleG2-4 and MCAODC_17285 are separated by 113 nucleotides MCAODC_17285 and MCAODC_17290 are separated by 1 nucleotides
MCAODC_17270: nleG7 - Type III secretion system effector NleG7, E3 Ubiquitin Ligase, at 339,204 to 339,854
nleG7
MCAODC_17275: MCAODC_17275 - T3SS effector NleG, at 340,128 to 340,274
_17275
MCAODC_17280: nleG2-4 - DUF1076 domain-containing protein, at 340,565 to 341,140
nleG2-4
MCAODC_17285: MCAODC_17285 - phage tail protein, at 341,254 to 341,523
_17285
MCAODC_17290: MCAODC_17290 - phage tail protein, at 341,525 to 342,748
_17290
Position (kb) 340
341
342 Strain fitness (log2 ratio) -2
-1
0
1 at 339.589 kb on - strand, within nleG7 at 339.847 kb on - strand at 339.869 kb on - strand at 339.917 kb on - strand at 339.917 kb on - strand at 339.952 kb on - strand at 340.070 kb on - strand at 340.254 kb on - strand, within MCAODC_17275 at 340.255 kb on + strand, within MCAODC_17275 at 340.255 kb on + strand, within MCAODC_17275 at 340.255 kb on + strand, within MCAODC_17275 at 340.280 kb on + strand at 340.524 kb on - strand at 340.543 kb on + strand at 340.939 kb on + strand, within nleG2-4 at 340.949 kb on - strand, within nleG2-4 at 340.953 kb on - strand, within nleG2-4 at 341.016 kb on + strand, within nleG2-4 at 341.016 kb on + strand, within nleG2-4 at 341.016 kb on + strand, within nleG2-4 at 341.016 kb on + strand, within nleG2-4 at 341.158 kb on - strand at 341.161 kb on + strand at 341.203 kb on - strand at 341.203 kb on - strand at 341.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 339,589 - nleG7 MCAODC_17270 0.59 -1.4 339,847 - +1.1 339,869 - -2.0 339,917 - -1.3 339,917 - -0.6 339,952 - -1.8 340,070 - +1.2 340,254 - MCAODC_17275 0.86 -0.6 340,255 + MCAODC_17275 0.86 +0.4 340,255 + MCAODC_17275 0.86 +1.4 340,255 + MCAODC_17275 0.86 -1.0 340,280 + +1.3 340,524 - -1.8 340,543 + -0.8 340,939 + nleG2-4 MCAODC_17280 0.65 -0.9 340,949 - nleG2-4 MCAODC_17280 0.67 -0.8 340,953 - nleG2-4 MCAODC_17280 0.67 -1.3 341,016 + nleG2-4 MCAODC_17280 0.78 -0.0 341,016 + nleG2-4 MCAODC_17280 0.78 -1.2 341,016 + nleG2-4 MCAODC_17280 0.78 -0.1 341,016 + nleG2-4 MCAODC_17280 0.78 -1.1 341,158 - -2.4 341,161 + -1.4 341,203 - +0.4 341,203 - -2.6 341,256 - +1.0
Or see this region's nucleotide sequence