Strain Fitness in Escherichia coli ECRC101 around MCAODC_15655

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsohB and yciN are separated by 35 nucleotidesyciN and MCAODC_15660 are separated by 379 nucleotides MCAODC_15650: sohB - protease SohB, at 20,026 to 21,075 sohB MCAODC_15655: yciN - Protein YciN, at 21,111 to 21,362 yciN MCAODC_15660: MCAODC_15660 - type I DNA topoisomerase, at 21,742 to 24,339 _15660 Position (kb) 21 22Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 20.176 kb on + strand, within sohBat 20.176 kb on + strand, within sohBat 20.176 kb on + strand, within sohBat 20.176 kb on + strand, within sohBat 20.176 kb on + strand, within sohBat 20.176 kb on + strand, within sohBat 20.178 kb on + strand, within sohBat 20.179 kb on - strand, within sohBat 20.349 kb on + strand, within sohBat 20.566 kb on + strand, within sohBat 20.679 kb on + strand, within sohBat 20.710 kb on + strand, within sohBat 20.712 kb on + strand, within sohBat 20.712 kb on + strand, within sohBat 20.718 kb on + strand, within sohBat 20.795 kb on + strand, within sohBat 20.817 kb on + strand, within sohBat 20.925 kb on + strand, within sohBat 20.963 kb on + strand, within sohBat 20.963 kb on + strand, within sohBat 20.963 kb on + strand, within sohBat 20.968 kb on + strand, within sohBat 20.970 kb on + strand, within sohBat 20.970 kb on + strand, within sohBat 21.038 kb on + strandat 21.093 kb on - strandat 21.164 kb on + strand, within yciNat 21.165 kb on - strand, within yciNat 21.165 kb on - strand, within yciNat 21.218 kb on - strand, within yciNat 21.364 kb on - strandat 21.364 kb on - strandat 21.388 kb on - strandat 21.419 kb on - strandat 21.419 kb on - strandat 21.419 kb on - strandat 21.420 kb on + strandat 21.421 kb on - strandat 21.472 kb on - strandat 21.474 kb on + strandat 21.475 kb on - strandat 21.502 kb on - strandat 21.569 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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20,176 + sohB MCAODC_15650 0.14 +0.6
20,176 + sohB MCAODC_15650 0.14 -0.8
20,176 + sohB MCAODC_15650 0.14 -0.4
20,176 + sohB MCAODC_15650 0.14 -0.8
20,176 + sohB MCAODC_15650 0.14 -0.2
20,176 + sohB MCAODC_15650 0.14 -0.2
20,178 + sohB MCAODC_15650 0.14 +0.2
20,179 - sohB MCAODC_15650 0.15 +0.1
20,349 + sohB MCAODC_15650 0.31 +0.1
20,566 + sohB MCAODC_15650 0.51 +0.1
20,679 + sohB MCAODC_15650 0.62 +0.2
20,710 + sohB MCAODC_15650 0.65 -3.0
20,712 + sohB MCAODC_15650 0.65 -0.2
20,712 + sohB MCAODC_15650 0.65 -0.6
20,718 + sohB MCAODC_15650 0.66 +4.5
20,795 + sohB MCAODC_15650 0.73 +1.4
20,817 + sohB MCAODC_15650 0.75 +1.0
20,925 + sohB MCAODC_15650 0.86 +0.6
20,963 + sohB MCAODC_15650 0.89 +0.6
20,963 + sohB MCAODC_15650 0.89 -1.1
20,963 + sohB MCAODC_15650 0.89 -0.2
20,968 + sohB MCAODC_15650 0.90 -0.6
20,970 + sohB MCAODC_15650 0.90 +1.7
20,970 + sohB MCAODC_15650 0.90 -1.0
21,038 + -0.6
21,093 - -1.4
21,164 + yciN MCAODC_15655 0.21 -0.0
21,165 - yciN MCAODC_15655 0.21 -0.7
21,165 - yciN MCAODC_15655 0.21 -3.7
21,218 - yciN MCAODC_15655 0.42 -0.6
21,364 - -1.2
21,364 - +0.2
21,388 - +0.7
21,419 - +0.9
21,419 - +1.1
21,419 - -0.3
21,420 + +0.4
21,421 - +0.8
21,472 - -0.5
21,474 + -1.3
21,475 - -0.8
21,502 - +0.6
21,569 - -2.0

Or see this region's nucleotide sequence