Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt abgB and sthA are separated by 329 nucleotides sthA and oxyR overlap by 18 nucleotides
MCAODC_04055: abgB - amidohydrolase, at 817,229 to 818,395
abgB
MCAODC_04060: sthA - Si-specific NAD(P)(+) transhydrogenase, at 818,725 to 820,125
sthA
MCAODC_04065: oxyR - DNA-binding transcriptional regulator OxyR, at 820,108 to 821,025
oxyR
Position (kb) 818
819
820
821 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 817.749 kb on - strand, within abgB at 817.762 kb on + strand, within abgB at 817.762 kb on + strand, within abgB at 817.762 kb on + strand, within abgB at 817.763 kb on - strand, within abgB at 817.763 kb on - strand, within abgB at 817.763 kb on - strand, within abgB at 817.763 kb on - strand, within abgB at 817.775 kb on + strand, within abgB at 817.775 kb on + strand, within abgB at 817.775 kb on + strand, within abgB at 817.775 kb on + strand, within abgB at 817.834 kb on + strand, within abgB at 817.835 kb on - strand, within abgB at 817.835 kb on - strand, within abgB at 817.835 kb on - strand, within abgB at 817.837 kb on + strand, within abgB at 817.838 kb on - strand, within abgB at 817.838 kb on - strand, within abgB at 817.882 kb on - strand, within abgB at 817.912 kb on + strand, within abgB at 817.912 kb on + strand, within abgB at 817.912 kb on + strand, within abgB at 817.913 kb on - strand, within abgB at 817.913 kb on - strand, within abgB at 817.963 kb on + strand, within abgB at 817.984 kb on + strand, within abgB at 818.011 kb on + strand, within abgB at 818.011 kb on + strand, within abgB at 818.012 kb on - strand, within abgB at 818.018 kb on + strand, within abgB at 818.018 kb on + strand, within abgB at 818.019 kb on - strand, within abgB at 818.019 kb on - strand, within abgB at 818.019 kb on - strand, within abgB at 818.019 kb on - strand, within abgB at 818.029 kb on + strand, within abgB at 818.053 kb on - strand, within abgB at 818.073 kb on - strand, within abgB at 818.080 kb on + strand, within abgB at 818.081 kb on - strand, within abgB at 818.108 kb on + strand, within abgB at 818.123 kb on - strand, within abgB at 818.143 kb on + strand, within abgB at 818.144 kb on - strand, within abgB at 818.151 kb on + strand, within abgB at 818.188 kb on + strand, within abgB at 818.189 kb on - strand, within abgB at 818.189 kb on - strand, within abgB at 818.213 kb on + strand, within abgB at 818.214 kb on - strand, within abgB at 818.252 kb on + strand, within abgB at 818.253 kb on - strand, within abgB at 818.253 kb on - strand, within abgB at 818.260 kb on - strand, within abgB at 818.302 kb on + strand at 818.313 kb on - strand at 818.313 kb on - strand at 818.313 kb on - strand at 818.313 kb on - strand at 818.313 kb on - strand at 818.381 kb on - strand at 818.381 kb on - strand at 818.383 kb on - strand at 818.416 kb on + strand at 818.418 kb on + strand at 818.427 kb on + strand at 818.442 kb on - strand at 818.586 kb on + strand at 818.587 kb on - strand at 818.633 kb on + strand at 818.704 kb on + strand at 818.715 kb on - strand at 818.753 kb on + strand at 818.756 kb on + strand at 818.759 kb on + strand at 818.759 kb on + strand at 818.760 kb on - strand at 818.914 kb on - strand, within sthA at 818.915 kb on + strand, within sthA at 818.915 kb on + strand, within sthA at 818.915 kb on + strand, within sthA at 818.916 kb on - strand, within sthA at 818.916 kb on - strand, within sthA at 818.916 kb on - strand, within sthA at 818.936 kb on + strand, within sthA at 818.936 kb on + strand, within sthA at 818.936 kb on + strand, within sthA at 818.937 kb on - strand, within sthA at 818.938 kb on + strand, within sthA at 818.938 kb on + strand, within sthA at 818.938 kb on + strand, within sthA at 818.938 kb on + strand, within sthA at 818.939 kb on - strand, within sthA at 818.939 kb on - strand, within sthA at 818.939 kb on - strand, within sthA at 819.037 kb on + strand, within sthA at 819.038 kb on - strand, within sthA at 819.046 kb on - strand, within sthA at 819.046 kb on - strand, within sthA at 819.093 kb on + strand, within sthA at 819.094 kb on - strand, within sthA at 819.176 kb on - strand, within sthA at 819.260 kb on + strand, within sthA at 819.260 kb on + strand, within sthA at 819.260 kb on + strand, within sthA at 819.260 kb on + strand, within sthA at 819.260 kb on + strand, within sthA at 819.261 kb on - strand, within sthA at 819.261 kb on - strand, within sthA at 819.264 kb on + strand, within sthA at 819.264 kb on + strand, within sthA at 819.264 kb on + strand, within sthA at 819.264 kb on + strand, within sthA at 819.265 kb on - strand, within sthA at 819.265 kb on - strand, within sthA at 819.265 kb on - strand, within sthA at 819.268 kb on + strand, within sthA at 819.268 kb on + strand, within sthA at 819.268 kb on + strand, within sthA at 819.269 kb on - strand, within sthA at 819.269 kb on - strand, within sthA at 819.295 kb on + strand, within sthA at 819.324 kb on - strand, within sthA at 819.397 kb on + strand, within sthA at 819.398 kb on - strand, within sthA at 819.442 kb on + strand, within sthA at 819.523 kb on + strand, within sthA at 819.523 kb on + strand, within sthA at 819.524 kb on - strand, within sthA at 819.563 kb on + strand, within sthA at 819.620 kb on - strand, within sthA at 819.620 kb on - strand, within sthA at 819.620 kb on - strand, within sthA at 819.620 kb on - strand, within sthA at 819.775 kb on + strand, within sthA at 819.775 kb on + strand, within sthA at 819.776 kb on - strand, within sthA at 819.842 kb on - strand, within sthA at 819.984 kb on + strand, within sthA at 819.984 kb on + strand, within sthA at 820.059 kb on + strand at 820.060 kb on - strand at 820.060 kb on - strand at 820.060 kb on - strand at 820.182 kb on - strand at 820.224 kb on + strand, within oxyR at 820.224 kb on + strand, within oxyR at 820.245 kb on + strand, within oxyR at 820.377 kb on + strand, within oxyR at 820.378 kb on - strand, within oxyR at 820.378 kb on - strand, within oxyR at 820.517 kb on + strand, within oxyR at 820.517 kb on + strand, within oxyR at 820.517 kb on + strand, within oxyR at 820.517 kb on + strand, within oxyR at 820.517 kb on + strand, within oxyR at 820.518 kb on - strand, within oxyR at 820.518 kb on - strand, within oxyR at 820.518 kb on - strand, within oxyR at 820.518 kb on - strand, within oxyR at 820.518 kb on - strand, within oxyR at 820.518 kb on - strand, within oxyR at 820.518 kb on - strand, within oxyR at 820.522 kb on - strand, within oxyR at 820.522 kb on - strand, within oxyR at 820.659 kb on - strand, within oxyR at 820.659 kb on - strand, within oxyR at 820.698 kb on + strand, within oxyR at 820.701 kb on + strand, within oxyR at 820.702 kb on - strand, within oxyR at 820.702 kb on - strand, within oxyR at 820.716 kb on - strand, within oxyR at 820.743 kb on + strand, within oxyR at 820.743 kb on + strand, within oxyR at 820.867 kb on - strand, within oxyR at 821.003 kb on + strand at 821.004 kb on - strand at 821.110 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 817,749 - abgB MCAODC_04055 0.45 -0.6 817,762 + abgB MCAODC_04055 0.46 -0.8 817,762 + abgB MCAODC_04055 0.46 -0.6 817,762 + abgB MCAODC_04055 0.46 -0.4 817,763 - abgB MCAODC_04055 0.46 -0.9 817,763 - abgB MCAODC_04055 0.46 -0.7 817,763 - abgB MCAODC_04055 0.46 +0.3 817,763 - abgB MCAODC_04055 0.46 -1.3 817,775 + abgB MCAODC_04055 0.47 +1.8 817,775 + abgB MCAODC_04055 0.47 -0.6 817,775 + abgB MCAODC_04055 0.47 -1.6 817,775 + abgB MCAODC_04055 0.47 +1.1 817,834 + abgB MCAODC_04055 0.52 +0.7 817,835 - abgB MCAODC_04055 0.52 -0.5 817,835 - abgB MCAODC_04055 0.52 +0.6 817,835 - abgB MCAODC_04055 0.52 +0.0 817,837 + abgB MCAODC_04055 0.52 -0.2 817,838 - abgB MCAODC_04055 0.52 -0.7 817,838 - abgB MCAODC_04055 0.52 +1.4 817,882 - abgB MCAODC_04055 0.56 +0.7 817,912 + abgB MCAODC_04055 0.59 +0.5 817,912 + abgB MCAODC_04055 0.59 +0.4 817,912 + abgB MCAODC_04055 0.59 +1.0 817,913 - abgB MCAODC_04055 0.59 -0.3 817,913 - abgB MCAODC_04055 0.59 +0.0 817,963 + abgB MCAODC_04055 0.63 -0.9 817,984 + abgB MCAODC_04055 0.65 -0.1 818,011 + abgB MCAODC_04055 0.67 -0.3 818,011 + abgB MCAODC_04055 0.67 -2.7 818,012 - abgB MCAODC_04055 0.67 +1.8 818,018 + abgB MCAODC_04055 0.68 +0.3 818,018 + abgB MCAODC_04055 0.68 -0.2 818,019 - abgB MCAODC_04055 0.68 -0.8 818,019 - abgB MCAODC_04055 0.68 +0.2 818,019 - abgB MCAODC_04055 0.68 -1.0 818,019 - abgB MCAODC_04055 0.68 -0.4 818,029 + abgB MCAODC_04055 0.69 -1.0 818,053 - abgB MCAODC_04055 0.71 -0.0 818,073 - abgB MCAODC_04055 0.72 +0.6 818,080 + abgB MCAODC_04055 0.73 -1.2 818,081 - abgB MCAODC_04055 0.73 +0.2 818,108 + abgB MCAODC_04055 0.75 -1.0 818,123 - abgB MCAODC_04055 0.77 +0.9 818,143 + abgB MCAODC_04055 0.78 -1.9 818,144 - abgB MCAODC_04055 0.78 +0.2 818,151 + abgB MCAODC_04055 0.79 -2.7 818,188 + abgB MCAODC_04055 0.82 -0.2 818,189 - abgB MCAODC_04055 0.82 -1.4 818,189 - abgB MCAODC_04055 0.82 -0.1 818,213 + abgB MCAODC_04055 0.84 -0.2 818,214 - abgB MCAODC_04055 0.84 +1.9 818,252 + abgB MCAODC_04055 0.88 +0.2 818,253 - abgB MCAODC_04055 0.88 -0.9 818,253 - abgB MCAODC_04055 0.88 +1.9 818,260 - abgB MCAODC_04055 0.88 -2.3 818,302 + -0.3 818,313 - -0.2 818,313 - +0.7 818,313 - +1.5 818,313 - -0.1 818,313 - -1.5 818,381 - -0.2 818,381 - +0.7 818,383 - +0.2 818,416 + +0.1 818,418 + -1.1 818,427 + +1.1 818,442 - +0.6 818,586 + -0.6 818,587 - +0.1 818,633 + -0.6 818,704 + -1.5 818,715 - -1.7 818,753 + -0.0 818,756 + -0.4 818,759 + -1.8 818,759 + -0.2 818,760 - +0.3 818,914 - sthA MCAODC_04060 0.13 -1.9 818,915 + sthA MCAODC_04060 0.14 +0.8 818,915 + sthA MCAODC_04060 0.14 -0.6 818,915 + sthA MCAODC_04060 0.14 -1.4 818,916 - sthA MCAODC_04060 0.14 -0.0 818,916 - sthA MCAODC_04060 0.14 -1.3 818,916 - sthA MCAODC_04060 0.14 -1.6 818,936 + sthA MCAODC_04060 0.15 +2.8 818,936 + sthA MCAODC_04060 0.15 +0.3 818,936 + sthA MCAODC_04060 0.15 +0.2 818,937 - sthA MCAODC_04060 0.15 -0.7 818,938 + sthA MCAODC_04060 0.15 -0.9 818,938 + sthA MCAODC_04060 0.15 +1.0 818,938 + sthA MCAODC_04060 0.15 -0.9 818,938 + sthA MCAODC_04060 0.15 -2.3 818,939 - sthA MCAODC_04060 0.15 +1.0 818,939 - sthA MCAODC_04060 0.15 -0.3 818,939 - sthA MCAODC_04060 0.15 +1.4 819,037 + sthA MCAODC_04060 0.22 -0.7 819,038 - sthA MCAODC_04060 0.22 -0.8 819,046 - sthA MCAODC_04060 0.23 -0.4 819,046 - sthA MCAODC_04060 0.23 -0.0 819,093 + sthA MCAODC_04060 0.26 +0.2 819,094 - sthA MCAODC_04060 0.26 +0.2 819,176 - sthA MCAODC_04060 0.32 +0.4 819,260 + sthA MCAODC_04060 0.38 -0.4 819,260 + sthA MCAODC_04060 0.38 +0.9 819,260 + sthA MCAODC_04060 0.38 -1.5 819,260 + sthA MCAODC_04060 0.38 +0.4 819,260 + sthA MCAODC_04060 0.38 -2.5 819,261 - sthA MCAODC_04060 0.38 -0.2 819,261 - sthA MCAODC_04060 0.38 -2.4 819,264 + sthA MCAODC_04060 0.38 -0.6 819,264 + sthA MCAODC_04060 0.38 -0.9 819,264 + sthA MCAODC_04060 0.38 -0.8 819,264 + sthA MCAODC_04060 0.38 -0.0 819,265 - sthA MCAODC_04060 0.39 -0.8 819,265 - sthA MCAODC_04060 0.39 -1.5 819,265 - sthA MCAODC_04060 0.39 +0.2 819,268 + sthA MCAODC_04060 0.39 -0.4 819,268 + sthA MCAODC_04060 0.39 -0.0 819,268 + sthA MCAODC_04060 0.39 -1.1 819,269 - sthA MCAODC_04060 0.39 -1.5 819,269 - sthA MCAODC_04060 0.39 -1.5 819,295 + sthA MCAODC_04060 0.41 -1.3 819,324 - sthA MCAODC_04060 0.43 +1.2 819,397 + sthA MCAODC_04060 0.48 +0.8 819,398 - sthA MCAODC_04060 0.48 -0.0 819,442 + sthA MCAODC_04060 0.51 -0.6 819,523 + sthA MCAODC_04060 0.57 +0.2 819,523 + sthA MCAODC_04060 0.57 +0.9 819,524 - sthA MCAODC_04060 0.57 -1.8 819,563 + sthA MCAODC_04060 0.60 +1.0 819,620 - sthA MCAODC_04060 0.64 +0.9 819,620 - sthA MCAODC_04060 0.64 -2.0 819,620 - sthA MCAODC_04060 0.64 +1.2 819,620 - sthA MCAODC_04060 0.64 -0.0 819,775 + sthA MCAODC_04060 0.75 -1.3 819,775 + sthA MCAODC_04060 0.75 +2.8 819,776 - sthA MCAODC_04060 0.75 +2.0 819,842 - sthA MCAODC_04060 0.80 +0.1 819,984 + sthA MCAODC_04060 0.90 -0.8 819,984 + sthA MCAODC_04060 0.90 -1.5 820,059 + +0.6 820,060 - +0.1 820,060 - -1.2 820,060 - -1.1 820,182 - +0.3 820,224 + oxyR MCAODC_04065 0.13 +1.4 820,224 + oxyR MCAODC_04065 0.13 +0.9 820,245 + oxyR MCAODC_04065 0.15 +0.2 820,377 + oxyR MCAODC_04065 0.29 +0.8 820,378 - oxyR MCAODC_04065 0.29 +0.2 820,378 - oxyR MCAODC_04065 0.29 -2.3 820,517 + oxyR MCAODC_04065 0.45 +0.7 820,517 + oxyR MCAODC_04065 0.45 -0.9 820,517 + oxyR MCAODC_04065 0.45 +0.0 820,517 + oxyR MCAODC_04065 0.45 -0.4 820,517 + oxyR MCAODC_04065 0.45 +1.5 820,518 - oxyR MCAODC_04065 0.45 -0.8 820,518 - oxyR MCAODC_04065 0.45 -1.2 820,518 - oxyR MCAODC_04065 0.45 -0.2 820,518 - oxyR MCAODC_04065 0.45 -0.4 820,518 - oxyR MCAODC_04065 0.45 -0.4 820,518 - oxyR MCAODC_04065 0.45 -1.4 820,518 - oxyR MCAODC_04065 0.45 -1.0 820,522 - oxyR MCAODC_04065 0.45 +0.2 820,522 - oxyR MCAODC_04065 0.45 +0.6 820,659 - oxyR MCAODC_04065 0.60 +0.8 820,659 - oxyR MCAODC_04065 0.60 -1.0 820,698 + oxyR MCAODC_04065 0.64 -0.2 820,701 + oxyR MCAODC_04065 0.65 +0.8 820,702 - oxyR MCAODC_04065 0.65 -0.2 820,702 - oxyR MCAODC_04065 0.65 +0.8 820,716 - oxyR MCAODC_04065 0.66 +0.2 820,743 + oxyR MCAODC_04065 0.69 +0.3 820,743 + oxyR MCAODC_04065 0.69 +0.1 820,867 - oxyR MCAODC_04065 0.83 +0.2 821,003 + -0.4 821,004 - -0.5 821,110 - +0.4
Or see this region's nucleotide sequence