Strain Fitness in Bosea sp. OAE506 around ABIE41_RS10995

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
2,255,557	+		ABIE41_RS10985	0.17	-0.8
2,255,557	+		ABIE41_RS10985	0.17	-1.1
2,255,557	+		ABIE41_RS10985	0.17	-0.1
2,255,557	+		ABIE41_RS10985	0.17	+0.1
2,255,557	+		ABIE41_RS10985	0.17	+0.0
2,255,558	-		ABIE41_RS10985	0.18	-1.9
2,255,558	-		ABIE41_RS10985	0.18	+0.0
2,255,558	-		ABIE41_RS10985	0.18	-0.4
2,255,558	-		ABIE41_RS10985	0.18	-0.9
2,255,558	-		ABIE41_RS10985	0.18	-2.6
2,255,851	+				-0.8
2,255,851	+				-0.5
2,255,851	+				-1.4
2,255,851	+				-0.2
2,255,851	+				-2.0
2,255,852	-				-0.6
2,255,852	-				-0.5
2,255,852	-				-1.7
2,255,852	-				+0.4
2,255,852	-				-1.2
2,255,852	-				-0.8
2,255,852	-				-0.4
2,256,076	+		ABIE41_RS10990	0.37	+0.6
2,256,076	+		ABIE41_RS10990	0.37	+0.1
2,256,076	+		ABIE41_RS10990	0.37	-0.1
2,256,329	-		ABIE41_RS10990	0.87	-0.9
2,256,329	-		ABIE41_RS10990	0.87	+0.1
2,256,374	+				-0.6
2,256,374	+				-0.7
2,256,375	-				+0.9
2,256,392	+				+0.1
2,256,392	+				-0.5
2,256,392	+				-0.2
2,256,392	+				+0.6
2,256,393	-				+1.8
2,256,393	-				+0.2
2,256,853	-		ABIE41_RS10995	0.17	-0.1
2,257,851	+		ABIE41_RS10995	0.56	-0.9
2,257,851	+		ABIE41_RS10995	0.56	-0.6
2,257,852	-		ABIE41_RS10995	0.56	+0.9
2,257,852	-		ABIE41_RS10995	0.56	+0.4
2,257,852	-		ABIE41_RS10995	0.56	-0.2
2,258,098	+		ABIE41_RS10995	0.66	-0.4
2,258,098	+		ABIE41_RS10995	0.66	-0.4
2,258,098	+		ABIE41_RS10995	0.66	-0.2
2,258,098	+		ABIE41_RS10995	0.66	+1.0
2,258,099	-		ABIE41_RS10995	0.66	-0.9
2,258,099	-		ABIE41_RS10995	0.66	-0.2
2,258,099	-		ABIE41_RS10995	0.66	-1.2
2,258,369	+		ABIE41_RS10995	0.76	+1.6
2,258,607	+		ABIE41_RS10995	0.86	+0.8
2,258,926	+				+0.3
2,258,947	+				-1.4
2,259,083	+				+0.0
2,259,083	+				+1.0
2,259,083	+				+0.6
2,259,083	+				-0.5
2,259,084	-				-1.1
2,259,084	-				-0.9
2,259,084	-				-1.3
2,259,144	+				-0.3
2,259,145	-				+0.3
2,259,848	+				+1.1
2,259,848	+				+1.2
2,259,849	-				-0.2
2,259,849	-				+0.0
2,259,849	-				+0.4
2,259,849	-				+0.0
2,259,850	-				+0.0
2,259,857	-				+2.6
2,259,857	-				+0.5
2,259,886	+				+0.7