Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08145 and ABIE41_RS08150 are separated by 115 nucleotides ABIE41_RS08150 and ABIE41_RS08155 are separated by 177 nucleotides ABIE41_RS08155 and ABIE41_RS08160 are separated by 4 nucleotides
ABIE41_RS08145: ABIE41_RS08145 - CoA ester lyase, at 1,685,339 to 1,686,214
_RS08145
ABIE41_RS08150: ABIE41_RS08150 - inorganic diphosphatase, at 1,686,330 to 1,686,875
_RS08150
ABIE41_RS08155: ABIE41_RS08155 - sulfur transferase domain-containing protein, at 1,687,053 to 1,687,775
_RS08155
ABIE41_RS08160: ABIE41_RS08160 - hypothetical protein, at 1,687,780 to 1,689,150
_RS08160
Position (kb)
1686
1687 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1685.372 kb on + strand at 1685.372 kb on + strand at 1685.372 kb on + strand at 1685.372 kb on + strand at 1685.372 kb on + strand at 1685.372 kb on + strand at 1685.372 kb on + strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.443 kb on + strand, within ABIE41_RS08145 at 1685.520 kb on - strand, within ABIE41_RS08145 at 1685.560 kb on + strand, within ABIE41_RS08145 at 1685.927 kb on + strand, within ABIE41_RS08145 at 1685.927 kb on + strand, within ABIE41_RS08145 at 1685.928 kb on - strand, within ABIE41_RS08145 at 1686.913 kb on - strand at 1686.955 kb on - strand at 1687.773 kb on + strand at 1687.773 kb on + strand at 1687.773 kb on + strand at 1687.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 1,685,372 + +0.1 1,685,372 + -0.4 1,685,372 + -0.4 1,685,372 + +0.1 1,685,372 + +0.8 1,685,372 + -0.7 1,685,372 + -0.4 1,685,373 - +1.0 1,685,373 - -0.1 1,685,373 - -0.1 1,685,373 - -0.1 1,685,373 - +0.0 1,685,373 - -0.8 1,685,373 - -0.6 1,685,373 - -1.0 1,685,373 - -0.1 1,685,373 - +0.4 1,685,443 + ABIE41_RS08145 0.12 -0.8 1,685,520 - ABIE41_RS08145 0.21 -1.0 1,685,560 + ABIE41_RS08145 0.25 +0.8 1,685,927 + ABIE41_RS08145 0.67 -0.2 1,685,927 + ABIE41_RS08145 0.67 +0.1 1,685,928 - ABIE41_RS08145 0.67 +0.2 1,686,913 - +0.2 1,686,955 - -0.4 1,687,773 + -1.8 1,687,773 + +0.1 1,687,773 + +0.2 1,687,774 - +1.8
Or see this region's nucleotide sequence