Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01760

Experiment: Ying_all64 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01755 and ABIE41_RS01760 are separated by 67 nucleotidesABIE41_RS01760 and ABIE41_RS01765 are separated by 176 nucleotidesABIE41_RS01765 and ABIE41_RS01770 are separated by 7 nucleotides ABIE41_RS01755: ABIE41_RS01755 - adenosylcobinamide-phosphate synthase CbiB, at 356,341 to 357,360 _RS01755 ABIE41_RS01760: ABIE41_RS01760 - CopG family transcriptional regulator, at 357,428 to 357,655 _RS01760 ABIE41_RS01765: ABIE41_RS01765 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 357,832 to 358,443 _RS01765 ABIE41_RS01770: ABIE41_RS01770 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 358,451 to 358,969 _RS01770 Position (kb) 357 358Strain fitness (log2 ratio) -2 -1 0 1at 357.563 kb on + strand, within ABIE41_RS01760at 357.564 kb on - strand, within ABIE41_RS01760at 357.564 kb on - strand, within ABIE41_RS01760at 357.564 kb on - strand, within ABIE41_RS01760at 358.413 kb on - strandat 358.413 kb on - strandat 358.413 kb on - strandat 358.458 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2
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357,563 + ABIE41_RS01760 0.59 +0.3
357,564 - ABIE41_RS01760 0.60 +0.5
357,564 - ABIE41_RS01760 0.60 -0.1
357,564 - ABIE41_RS01760 0.60 -0.0
358,413 - -1.3
358,413 - +0.4
358,413 - -2.3
358,458 - -0.8

Or see this region's nucleotide sequence