Strain Fitness in Bosea sp. OAE506 around ABIE41_RS23280

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
4,789,884	+		ABIE41_RS23270	0.43	-1.3
4,789,884	+		ABIE41_RS23270	0.43	-1.0
4,789,885	-		ABIE41_RS23270	0.43	-0.8
4,789,885	-		ABIE41_RS23270	0.43	+0.4
4,789,978	+		ABIE41_RS23270	0.64	-0.1
4,789,978	+		ABIE41_RS23270	0.64	-0.0
4,789,979	-		ABIE41_RS23270	0.64	-0.4
4,789,979	-		ABIE41_RS23270	0.64	-0.5
4,790,119	+				-0.6
4,790,120	-				+0.1
4,790,121	+				+1.1
4,790,121	+				+0.1
4,790,121	+				-0.4
4,790,122	-				-0.4
4,790,122	-				+0.3
4,790,292	-				+0.6
4,790,316	+				-1.2
4,790,721	+		ABIE41_RS23275	0.83	-0.0
4,790,721	+		ABIE41_RS23275	0.83	-4.8
4,790,721	+		ABIE41_RS23275	0.83	+0.2
4,790,721	+		ABIE41_RS23275	0.83	+0.6
4,790,722	-		ABIE41_RS23275	0.83	-0.7
4,790,722	-		ABIE41_RS23275	0.83	+1.6
4,790,722	-		ABIE41_RS23275	0.83	+0.2
4,790,722	-		ABIE41_RS23275	0.83	-1.7
4,790,848	+				+0.8
4,791,070	+		ABIE41_RS23280	0.28	-1.1
4,791,071	-		ABIE41_RS23280	0.29	-1.1
4,791,097	+		ABIE41_RS23280	0.31	-1.4
4,791,124	+		ABIE41_RS23280	0.35	-1.5
4,791,124	+		ABIE41_RS23280	0.35	-0.5
4,791,125	-		ABIE41_RS23280	0.35	-0.3
4,791,125	-		ABIE41_RS23280	0.35	-2.0
4,791,244	+		ABIE41_RS23280	0.48	-0.5
4,791,244	+		ABIE41_RS23280	0.48	-0.9
4,791,244	+		ABIE41_RS23280	0.48	+0.3
4,791,244	+		ABIE41_RS23280	0.48	-3.0
4,791,245	-		ABIE41_RS23280	0.49	-0.8
4,791,245	-		ABIE41_RS23280	0.49	-1.5
4,791,277	-		ABIE41_RS23280	0.52	-0.4
4,791,295	+		ABIE41_RS23280	0.54	-0.3
4,791,295	+		ABIE41_RS23280	0.54	+0.0
4,791,295	+		ABIE41_RS23280	0.54	-1.0
4,791,296	-		ABIE41_RS23280	0.54	-1.2
4,791,296	-		ABIE41_RS23280	0.54	-2.8
4,791,727	+				-0.7
4,791,727	+				-0.7
4,791,727	+				+0.3
4,791,728	-				-0.4
4,791,858	+				+0.0
4,791,859	-				-0.7
4,792,342	-		ABIE41_RS23285	0.38	+0.0
4,792,402	+		ABIE41_RS23285	0.42	-0.3
4,792,402	+		ABIE41_RS23285	0.42	+0.9
4,792,403	-		ABIE41_RS23285	0.42	-0.0
4,792,584	+		ABIE41_RS23285	0.54	+0.8
4,792,585	-		ABIE41_RS23285	0.54	-0.6
4,792,613	+		ABIE41_RS23285	0.56	+0.3
4,792,613	+		ABIE41_RS23285	0.56	+0.4
4,792,613	+		ABIE41_RS23285	0.56	+0.1
4,792,614	-		ABIE41_RS23285	0.56	-0.5
4,792,614	-		ABIE41_RS23285	0.56	-0.4
4,792,624	+		ABIE41_RS23285	0.57	-0.2