Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21950 and ABIE41_RS21955 are separated by 73 nucleotides ABIE41_RS21955 and ABIE41_RS21960 are separated by 277 nucleotides
ABIE41_RS21950: ABIE41_RS21950 - malonyl-CoA decarboxylase, at 4,511,755 to 4,513,083
_RS21950
ABIE41_RS21955: ABIE41_RS21955 - 3-oxo-tetronate kinase, at 4,513,157 to 4,514,422
_RS21955
ABIE41_RS21960: ABIE41_RS21960 - ABC transporter substrate-binding protein, at 4,514,700 to 4,516,205
_RS21960
Position (kb) 4513
4514
4515 Strain fitness (log2 ratio) -2
-1
0
1 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.527 kb on + strand, within ABIE41_RS21950 at 4512.999 kb on + strand at 4513.482 kb on + strand, within ABIE41_RS21955 at 4513.482 kb on + strand, within ABIE41_RS21955 at 4513.483 kb on - strand, within ABIE41_RS21955 at 4513.839 kb on + strand, within ABIE41_RS21955 at 4513.840 kb on - strand, within ABIE41_RS21955 at 4513.911 kb on + strand, within ABIE41_RS21955 at 4514.041 kb on - strand, within ABIE41_RS21955 at 4514.049 kb on + strand, within ABIE41_RS21955 at 4514.049 kb on + strand, within ABIE41_RS21955 at 4514.049 kb on + strand, within ABIE41_RS21955 at 4514.050 kb on - strand, within ABIE41_RS21955 at 4514.051 kb on - strand, within ABIE41_RS21955 at 4514.175 kb on + strand, within ABIE41_RS21955 at 4514.175 kb on + strand, within ABIE41_RS21955 at 4514.176 kb on - strand, within ABIE41_RS21955 at 4514.176 kb on - strand, within ABIE41_RS21955 at 4514.470 kb on + strand at 4514.471 kb on - strand at 4514.643 kb on + strand at 4514.644 kb on - strand at 4514.644 kb on - strand at 4514.900 kb on + strand, within ABIE41_RS21960 at 4514.900 kb on + strand, within ABIE41_RS21960 at 4514.900 kb on + strand, within ABIE41_RS21960 at 4514.900 kb on + strand, within ABIE41_RS21960 at 4514.900 kb on + strand, within ABIE41_RS21960 at 4514.901 kb on - strand, within ABIE41_RS21960 at 4514.901 kb on - strand, within ABIE41_RS21960 at 4515.243 kb on + strand, within ABIE41_RS21960 at 4515.243 kb on + strand, within ABIE41_RS21960 at 4515.243 kb on + strand, within ABIE41_RS21960 at 4515.244 kb on - strand, within ABIE41_RS21960 at 4515.318 kb on + strand, within ABIE41_RS21960 at 4515.318 kb on + strand, within ABIE41_RS21960 at 4515.319 kb on - strand, within ABIE41_RS21960 at 4515.319 kb on - strand, within ABIE41_RS21960 at 4515.319 kb on - strand, within ABIE41_RS21960 at 4515.340 kb on - strand, within ABIE41_RS21960
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 4,512,308 + ABIE41_RS21950 0.42 -0.7 4,512,308 + ABIE41_RS21950 0.42 +0.4 4,512,308 + ABIE41_RS21950 0.42 -0.5 4,512,308 + ABIE41_RS21950 0.42 -0.1 4,512,308 + ABIE41_RS21950 0.42 -0.9 4,512,308 + ABIE41_RS21950 0.42 -0.1 4,512,308 + ABIE41_RS21950 0.42 +1.4 4,512,308 + ABIE41_RS21950 0.42 +0.3 4,512,309 - ABIE41_RS21950 0.42 -0.1 4,512,309 - ABIE41_RS21950 0.42 -0.0 4,512,309 - ABIE41_RS21950 0.42 -0.1 4,512,309 - ABIE41_RS21950 0.42 +0.3 4,512,309 - ABIE41_RS21950 0.42 +0.7 4,512,527 + ABIE41_RS21950 0.58 +0.2 4,512,999 + -1.2 4,513,482 + ABIE41_RS21955 0.26 -1.2 4,513,482 + ABIE41_RS21955 0.26 -0.2 4,513,483 - ABIE41_RS21955 0.26 -0.2 4,513,839 + ABIE41_RS21955 0.54 -0.4 4,513,840 - ABIE41_RS21955 0.54 +1.0 4,513,911 + ABIE41_RS21955 0.60 -0.7 4,514,041 - ABIE41_RS21955 0.70 +0.1 4,514,049 + ABIE41_RS21955 0.70 -0.9 4,514,049 + ABIE41_RS21955 0.70 +0.9 4,514,049 + ABIE41_RS21955 0.70 -1.2 4,514,050 - ABIE41_RS21955 0.71 +0.2 4,514,051 - ABIE41_RS21955 0.71 -0.1 4,514,175 + ABIE41_RS21955 0.80 -1.6 4,514,175 + ABIE41_RS21955 0.80 -0.8 4,514,176 - ABIE41_RS21955 0.80 +0.6 4,514,176 - ABIE41_RS21955 0.80 -1.8 4,514,470 + -0.7 4,514,471 - +0.3 4,514,643 + +1.3 4,514,644 - +0.8 4,514,644 - -0.6 4,514,900 + ABIE41_RS21960 0.13 -0.0 4,514,900 + ABIE41_RS21960 0.13 -0.4 4,514,900 + ABIE41_RS21960 0.13 -0.1 4,514,900 + ABIE41_RS21960 0.13 -1.3 4,514,900 + ABIE41_RS21960 0.13 -0.5 4,514,901 - ABIE41_RS21960 0.13 +0.4 4,514,901 - ABIE41_RS21960 0.13 +0.2 4,515,243 + ABIE41_RS21960 0.36 -2.5 4,515,243 + ABIE41_RS21960 0.36 -0.0 4,515,243 + ABIE41_RS21960 0.36 -0.6 4,515,244 - ABIE41_RS21960 0.36 -0.1 4,515,318 + ABIE41_RS21960 0.41 +0.4 4,515,318 + ABIE41_RS21960 0.41 +0.1 4,515,319 - ABIE41_RS21960 0.41 -2.4 4,515,319 - ABIE41_RS21960 0.41 +0.1 4,515,319 - ABIE41_RS21960 0.41 -0.5 4,515,340 - ABIE41_RS21960 0.42 -0.4
Or see this region's nucleotide sequence