Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11310

Experiment: Ying_all64 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS11295 and ABIE41_RS11300 are separated by 9 nucleotidesABIE41_RS11300 and ABIE41_RS11305 overlap by 11 nucleotidesABIE41_RS11305 and ABIE41_RS11310 are separated by 144 nucleotidesABIE41_RS11310 and ABIE41_RS11315 are separated by 162 nucleotidesABIE41_RS11315 and ABIE41_RS11320 overlap by 4 nucleotides ABIE41_RS11295: ABIE41_RS11295 - redox-regulated ATPase YchF, at 2,322,939 to 2,324,036 _RS11295 ABIE41_RS11300: ABIE41_RS11300 - PIN domain-containing protein, at 2,324,046 to 2,324,492 _RS11300 ABIE41_RS11305: ABIE41_RS11305 - hypothetical protein, at 2,324,482 to 2,324,712 _RS11305 ABIE41_RS11310: ABIE41_RS11310 - hypothetical protein, at 2,324,857 to 2,325,453 _RS11310 ABIE41_RS11315: ABIE41_RS11315 - pyridoxamine 5'-phosphate oxidase family protein, at 2,325,616 to 2,326,050 _RS11315 ABIE41_RS11320: ABIE41_RS11320 - aminoacyl-tRNA hydrolase, at 2,326,047 to 2,326,658 _RS11320 Position (kb) 2324 2325 2326Strain fitness (log2 ratio) -3 -2 -1 0 1at 2324.130 kb on - strand, within ABIE41_RS11300at 2324.130 kb on - strand, within ABIE41_RS11300at 2324.146 kb on + strand, within ABIE41_RS11300at 2324.146 kb on + strand, within ABIE41_RS11300at 2324.201 kb on - strand, within ABIE41_RS11300at 2324.237 kb on + strand, within ABIE41_RS11300at 2324.237 kb on + strand, within ABIE41_RS11300at 2324.266 kb on + strand, within ABIE41_RS11300at 2324.355 kb on + strand, within ABIE41_RS11300at 2324.356 kb on - strand, within ABIE41_RS11300at 2324.429 kb on + strand, within ABIE41_RS11300at 2324.429 kb on + strand, within ABIE41_RS11300at 2324.429 kb on + strand, within ABIE41_RS11300at 2324.430 kb on - strand, within ABIE41_RS11300at 2324.430 kb on - strand, within ABIE41_RS11300at 2324.452 kb on + strandat 2324.453 kb on - strandat 2324.483 kb on + strandat 2324.492 kb on + strandat 2324.493 kb on - strandat 2324.493 kb on - strandat 2324.493 kb on - strandat 2324.624 kb on + strand, within ABIE41_RS11305at 2324.625 kb on - strand, within ABIE41_RS11305at 2324.633 kb on - strand, within ABIE41_RS11305at 2324.931 kb on + strand, within ABIE41_RS11310at 2324.931 kb on + strand, within ABIE41_RS11310at 2324.931 kb on + strand, within ABIE41_RS11310at 2324.932 kb on - strand, within ABIE41_RS11310at 2325.023 kb on - strand, within ABIE41_RS11310at 2325.023 kb on - strand, within ABIE41_RS11310at 2325.269 kb on - strand, within ABIE41_RS11310at 2325.447 kb on + strandat 2325.449 kb on - strandat 2325.641 kb on + strandat 2325.641 kb on + strandat 2325.642 kb on - strandat 2325.642 kb on - strandat 2325.705 kb on - strand, within ABIE41_RS11315at 2325.743 kb on - strand, within ABIE41_RS11315at 2325.870 kb on + strand, within ABIE41_RS11315at 2325.871 kb on - strand, within ABIE41_RS11315at 2325.871 kb on - strand, within ABIE41_RS11315at 2326.048 kb on + strandat 2326.048 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2
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2,324,130 - ABIE41_RS11300 0.19 +0.2
2,324,130 - ABIE41_RS11300 0.19 -0.8
2,324,146 + ABIE41_RS11300 0.22 -2.8
2,324,146 + ABIE41_RS11300 0.22 +0.3
2,324,201 - ABIE41_RS11300 0.35 -0.5
2,324,237 + ABIE41_RS11300 0.43 -0.6
2,324,237 + ABIE41_RS11300 0.43 -0.3
2,324,266 + ABIE41_RS11300 0.49 -0.1
2,324,355 + ABIE41_RS11300 0.69 -0.1
2,324,356 - ABIE41_RS11300 0.69 +0.2
2,324,429 + ABIE41_RS11300 0.86 +0.0
2,324,429 + ABIE41_RS11300 0.86 +0.0
2,324,429 + ABIE41_RS11300 0.86 +0.6
2,324,430 - ABIE41_RS11300 0.86 -0.1
2,324,430 - ABIE41_RS11300 0.86 +0.0
2,324,452 + -0.3
2,324,453 - -1.2
2,324,483 + +0.4
2,324,492 + -0.4
2,324,493 - +0.7
2,324,493 - +0.3
2,324,493 - +0.6
2,324,624 + ABIE41_RS11305 0.61 +0.4
2,324,625 - ABIE41_RS11305 0.62 +0.3
2,324,633 - ABIE41_RS11305 0.65 +0.1
2,324,931 + ABIE41_RS11310 0.12 -0.1
2,324,931 + ABIE41_RS11310 0.12 +0.6
2,324,931 + ABIE41_RS11310 0.12 -0.4
2,324,932 - ABIE41_RS11310 0.13 -1.5
2,325,023 - ABIE41_RS11310 0.28 -1.4
2,325,023 - ABIE41_RS11310 0.28 +1.4
2,325,269 - ABIE41_RS11310 0.69 -0.8
2,325,447 + +0.3
2,325,449 - -0.9
2,325,641 + -0.9
2,325,641 + -0.3
2,325,642 - +0.1
2,325,642 - -0.1
2,325,705 - ABIE41_RS11315 0.20 +0.7
2,325,743 - ABIE41_RS11315 0.29 +0.3
2,325,870 + ABIE41_RS11315 0.58 +0.0
2,325,871 - ABIE41_RS11315 0.59 -0.4
2,325,871 - ABIE41_RS11315 0.59 -0.7
2,326,048 + -0.2
2,326,048 + +0.2

Or see this region's nucleotide sequence