Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01340 and ABIE41_RS01345 are separated by 32 nucleotides ABIE41_RS01345 and ABIE41_RS01350 are separated by 184 nucleotides ABIE41_RS01350 and ABIE41_RS01355 are separated by 22 nucleotides
ABIE41_RS01340: ABIE41_RS01340 - septum site-determining protein MinD, at 265,886 to 266,701
_RS01340
ABIE41_RS01345: ABIE41_RS01345 - septum site-determining protein MinC, at 266,734 to 267,468
_RS01345
ABIE41_RS01350: ABIE41_RS01350 - hypothetical protein, at 267,653 to 267,892
_RS01350
ABIE41_RS01355: ABIE41_RS01355 - aldolase/citrate lyase family protein, at 267,915 to 268,712
_RS01355
Position (kb) 267
268 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 266.701 kb on + strand at 266.701 kb on + strand at 266.701 kb on + strand at 266.702 kb on - strand at 266.702 kb on - strand at 266.702 kb on - strand at 266.702 kb on - strand at 266.717 kb on - strand at 266.828 kb on + strand, within ABIE41_RS01345 at 266.828 kb on + strand, within ABIE41_RS01345 at 266.828 kb on + strand, within ABIE41_RS01345 at 266.829 kb on - strand, within ABIE41_RS01345 at 266.829 kb on - strand, within ABIE41_RS01345 at 266.829 kb on - strand, within ABIE41_RS01345 at 266.933 kb on + strand, within ABIE41_RS01345 at 266.933 kb on + strand, within ABIE41_RS01345 at 267.416 kb on + strand at 267.417 kb on - strand at 267.417 kb on - strand at 267.417 kb on - strand at 267.521 kb on + strand at 267.522 kb on - strand at 267.522 kb on - strand at 267.891 kb on - strand at 268.138 kb on + strand, within ABIE41_RS01355 at 268.487 kb on - strand, within ABIE41_RS01355 at 268.825 kb on + strand at 268.826 kb on - strand at 268.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 266,701 + +0.7 266,701 + -0.3 266,701 + -0.6 266,702 - -0.5 266,702 - -0.6 266,702 - -1.0 266,702 - -0.3 266,717 - -0.0 266,828 + ABIE41_RS01345 0.13 -2.6 266,828 + ABIE41_RS01345 0.13 -1.3 266,828 + ABIE41_RS01345 0.13 -2.9 266,829 - ABIE41_RS01345 0.13 -0.2 266,829 - ABIE41_RS01345 0.13 -0.1 266,829 - ABIE41_RS01345 0.13 -0.6 266,933 + ABIE41_RS01345 0.27 -0.9 266,933 + ABIE41_RS01345 0.27 -1.1 267,416 + -0.2 267,417 - -0.4 267,417 - +0.1 267,417 - -0.6 267,521 + -0.1 267,522 - +1.1 267,522 - +0.6 267,891 - +0.7 268,138 + ABIE41_RS01355 0.28 -0.5 268,487 - ABIE41_RS01355 0.72 +0.1 268,825 + +0.5 268,826 - -0.8 268,826 - +0.1
Or see this region's nucleotide sequence