Experiment: WM_Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_01230 and leuB overlap by 1 nucleotides leuB and leuC1 are separated by 2 nucleotides
MCAODC_01230: MCAODC_01230 - 2-isopropylmalate synthase, at 229,074 to 230,645
_01230
MCAODC_01235: leuB - 3-isopropylmalate dehydrogenase, at 230,645 to 231,736
leuB
MCAODC_01240: leuC1 - 3-isopropylmalate dehydratase large subunit 1, at 231,739 to 233,139
leuC1
Position (kb) 230
231
232 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 229.649 kb on + strand, within MCAODC_01230 at 229.667 kb on + strand, within MCAODC_01230 at 229.676 kb on - strand, within MCAODC_01230 at 229.680 kb on - strand, within MCAODC_01230 at 229.680 kb on - strand, within MCAODC_01230 at 229.680 kb on - strand, within MCAODC_01230 at 229.680 kb on - strand, within MCAODC_01230 at 229.726 kb on + strand, within MCAODC_01230 at 229.727 kb on - strand, within MCAODC_01230 at 229.818 kb on - strand, within MCAODC_01230 at 229.833 kb on - strand, within MCAODC_01230 at 229.857 kb on - strand, within MCAODC_01230 at 229.888 kb on + strand, within MCAODC_01230 at 229.888 kb on + strand, within MCAODC_01230 at 229.889 kb on - strand, within MCAODC_01230 at 229.889 kb on - strand, within MCAODC_01230 at 229.889 kb on - strand, within MCAODC_01230 at 229.893 kb on - strand, within MCAODC_01230 at 229.904 kb on + strand, within MCAODC_01230 at 229.904 kb on + strand, within MCAODC_01230 at 229.904 kb on + strand, within MCAODC_01230 at 229.904 kb on + strand, within MCAODC_01230 at 229.907 kb on + strand, within MCAODC_01230 at 230.005 kb on - strand, within MCAODC_01230 at 230.027 kb on + strand, within MCAODC_01230 at 230.027 kb on + strand, within MCAODC_01230 at 230.028 kb on - strand, within MCAODC_01230 at 230.110 kb on - strand, within MCAODC_01230 at 230.112 kb on - strand, within MCAODC_01230 at 230.126 kb on + strand, within MCAODC_01230 at 230.279 kb on + strand, within MCAODC_01230 at 230.370 kb on + strand, within MCAODC_01230 at 230.399 kb on + strand, within MCAODC_01230 at 230.399 kb on + strand, within MCAODC_01230 at 230.400 kb on - strand, within MCAODC_01230 at 230.400 kb on - strand, within MCAODC_01230 at 230.468 kb on + strand, within MCAODC_01230 at 230.468 kb on + strand, within MCAODC_01230 at 230.481 kb on + strand, within MCAODC_01230 at 230.482 kb on - strand, within MCAODC_01230 at 230.482 kb on - strand, within MCAODC_01230 at 230.482 kb on - strand, within MCAODC_01230 at 230.482 kb on - strand, within MCAODC_01230 at 230.522 kb on + strand at 230.557 kb on + strand at 230.557 kb on + strand at 230.557 kb on + strand at 230.558 kb on - strand at 230.558 kb on - strand at 230.558 kb on - strand at 230.558 kb on - strand at 230.561 kb on + strand at 230.561 kb on + strand at 230.561 kb on + strand at 230.561 kb on + strand at 230.561 kb on + strand at 230.561 kb on + strand at 230.562 kb on - strand at 230.562 kb on - strand at 230.562 kb on - strand at 230.568 kb on - strand at 230.657 kb on + strand at 230.657 kb on + strand at 230.663 kb on - strand at 230.771 kb on + strand, within leuB at 230.779 kb on - strand, within leuB at 230.779 kb on - strand, within leuB at 230.779 kb on - strand, within leuB at 230.779 kb on - strand, within leuB at 230.779 kb on - strand, within leuB at 230.779 kb on - strand, within leuB at 230.895 kb on + strand, within leuB at 230.896 kb on - strand, within leuB at 230.955 kb on + strand, within leuB at 231.077 kb on + strand, within leuB at 231.078 kb on - strand, within leuB at 231.078 kb on - strand, within leuB at 231.116 kb on + strand, within leuB at 231.117 kb on - strand, within leuB at 231.117 kb on - strand, within leuB at 231.144 kb on - strand, within leuB at 231.144 kb on - strand, within leuB at 231.144 kb on - strand, within leuB at 231.166 kb on + strand, within leuB at 231.166 kb on + strand, within leuB at 231.166 kb on + strand, within leuB at 231.167 kb on - strand, within leuB at 231.167 kb on - strand, within leuB at 231.196 kb on + strand, within leuB at 231.209 kb on - strand, within leuB at 231.256 kb on - strand, within leuB at 231.313 kb on + strand, within leuB at 231.313 kb on + strand, within leuB at 231.314 kb on - strand, within leuB at 231.314 kb on - strand, within leuB at 231.317 kb on + strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.346 kb on + strand, within leuB at 231.482 kb on + strand, within leuB at 231.482 kb on + strand, within leuB at 231.482 kb on + strand, within leuB at 231.482 kb on + strand, within leuB at 231.482 kb on + strand, within leuB at 231.482 kb on + strand, within leuB at 231.483 kb on - strand, within leuB at 231.483 kb on - strand, within leuB at 231.521 kb on - strand, within leuB at 231.634 kb on - strand at 231.660 kb on + strand at 231.685 kb on + strand at 231.685 kb on + strand at 231.685 kb on + strand at 231.716 kb on + strand at 231.717 kb on - strand at 231.717 kb on - strand at 231.717 kb on - strand at 231.734 kb on + strand at 231.734 kb on + strand at 231.734 kb on + strand at 231.734 kb on + strand at 231.735 kb on - strand at 231.735 kb on - strand at 231.735 kb on - strand at 231.735 kb on - strand at 231.745 kb on - strand at 231.755 kb on - strand at 231.779 kb on + strand at 231.779 kb on + strand at 231.780 kb on - strand at 231.780 kb on - strand at 231.780 kb on - strand at 231.780 kb on - strand at 231.780 kb on - strand at 231.780 kb on - strand at 231.784 kb on + strand at 231.785 kb on - strand at 231.812 kb on + strand at 231.812 kb on + strand at 231.812 kb on + strand at 231.812 kb on + strand at 231.813 kb on - strand at 231.813 kb on - strand at 231.813 kb on - strand at 231.813 kb on - strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.815 kb on - strand at 231.815 kb on - strand at 231.816 kb on + strand at 231.816 kb on + strand at 231.816 kb on + strand at 231.816 kb on + strand at 231.817 kb on - strand at 231.817 kb on - strand at 231.817 kb on - strand at 231.817 kb on - strand at 231.819 kb on - strand at 231.936 kb on + strand, within leuC1 at 231.937 kb on - strand, within leuC1 at 232.030 kb on + strand, within leuC1 at 232.049 kb on - strand, within leuC1 at 232.067 kb on + strand, within leuC1 at 232.067 kb on + strand, within leuC1 at 232.068 kb on - strand, within leuC1 at 232.128 kb on + strand, within leuC1 at 232.193 kb on + strand, within leuC1 at 232.193 kb on + strand, within leuC1 at 232.194 kb on - strand, within leuC1 at 232.285 kb on - strand, within leuC1 at 232.299 kb on + strand, within leuC1 at 232.370 kb on + strand, within leuC1 at 232.371 kb on - strand, within leuC1 at 232.402 kb on - strand, within leuC1 at 232.402 kb on - strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.459 kb on - strand, within leuC1 at 232.459 kb on - strand, within leuC1 at 232.462 kb on + strand, within leuC1 at 232.614 kb on + strand, within leuC1 at 232.647 kb on + strand, within leuC1 at 232.711 kb on + strand, within leuC1 at 232.711 kb on + strand, within leuC1 at 232.711 kb on + strand, within leuC1 at 232.711 kb on + strand, within leuC1 at 232.711 kb on + strand, within leuC1 at 232.712 kb on - strand, within leuC1 at 232.712 kb on - strand, within leuC1 at 232.713 kb on + strand, within leuC1 at 232.713 kb on + strand, within leuC1 at 232.714 kb on - strand, within leuC1
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas06 remove 229,649 + MCAODC_01230 0.37 -1.1 229,667 + MCAODC_01230 0.38 +0.0 229,676 - MCAODC_01230 0.38 -1.7 229,680 - MCAODC_01230 0.39 -0.7 229,680 - MCAODC_01230 0.39 -0.2 229,680 - MCAODC_01230 0.39 -2.3 229,680 - MCAODC_01230 0.39 -0.5 229,726 + MCAODC_01230 0.41 -1.8 229,727 - MCAODC_01230 0.42 +1.1 229,818 - MCAODC_01230 0.47 -0.5 229,833 - MCAODC_01230 0.48 -2.7 229,857 - MCAODC_01230 0.50 -0.4 229,888 + MCAODC_01230 0.52 -0.4 229,888 + MCAODC_01230 0.52 -3.2 229,889 - MCAODC_01230 0.52 -3.1 229,889 - MCAODC_01230 0.52 +0.3 229,889 - MCAODC_01230 0.52 +0.6 229,893 - MCAODC_01230 0.52 -1.2 229,904 + MCAODC_01230 0.53 -0.1 229,904 + MCAODC_01230 0.53 +1.3 229,904 + MCAODC_01230 0.53 -1.0 229,904 + MCAODC_01230 0.53 -1.0 229,907 + MCAODC_01230 0.53 +2.0 230,005 - MCAODC_01230 0.59 +0.6 230,027 + MCAODC_01230 0.61 -2.2 230,027 + MCAODC_01230 0.61 -3.3 230,028 - MCAODC_01230 0.61 -0.4 230,110 - MCAODC_01230 0.66 -2.6 230,112 - MCAODC_01230 0.66 -3.7 230,126 + MCAODC_01230 0.67 -2.1 230,279 + MCAODC_01230 0.77 -0.9 230,370 + MCAODC_01230 0.82 +0.9 230,399 + MCAODC_01230 0.84 +0.5 230,399 + MCAODC_01230 0.84 -1.3 230,400 - MCAODC_01230 0.84 +0.3 230,400 - MCAODC_01230 0.84 -2.2 230,468 + MCAODC_01230 0.89 +0.6 230,468 + MCAODC_01230 0.89 +1.9 230,481 + MCAODC_01230 0.90 +0.0 230,482 - MCAODC_01230 0.90 -0.0 230,482 - MCAODC_01230 0.90 +0.0 230,482 - MCAODC_01230 0.90 +2.3 230,482 - MCAODC_01230 0.90 +1.2 230,522 + -0.1 230,557 + -0.7 230,557 + -1.0 230,557 + +0.8 230,558 - -1.3 230,558 - +2.2 230,558 - -0.4 230,558 - +1.4 230,561 + -0.4 230,561 + +0.1 230,561 + -0.8 230,561 + -0.3 230,561 + +2.4 230,561 + +2.2 230,562 - +0.5 230,562 - +0.2 230,562 - -0.2 230,568 - -0.6 230,657 + -1.0 230,657 + -1.0 230,663 - -1.1 230,771 + leuB MCAODC_01235 0.12 -1.8 230,779 - leuB MCAODC_01235 0.12 -1.4 230,779 - leuB MCAODC_01235 0.12 +0.4 230,779 - leuB MCAODC_01235 0.12 -0.2 230,779 - leuB MCAODC_01235 0.12 -4.1 230,779 - leuB MCAODC_01235 0.12 -2.7 230,779 - leuB MCAODC_01235 0.12 -1.7 230,895 + leuB MCAODC_01235 0.23 -1.0 230,896 - leuB MCAODC_01235 0.23 -0.3 230,955 + leuB MCAODC_01235 0.28 +1.5 231,077 + leuB MCAODC_01235 0.40 -2.0 231,078 - leuB MCAODC_01235 0.40 +0.1 231,078 - leuB MCAODC_01235 0.40 -0.3 231,116 + leuB MCAODC_01235 0.43 -0.5 231,117 - leuB MCAODC_01235 0.43 -2.8 231,117 - leuB MCAODC_01235 0.43 -1.5 231,144 - leuB MCAODC_01235 0.46 -1.7 231,144 - leuB MCAODC_01235 0.46 -3.6 231,144 - leuB MCAODC_01235 0.46 -3.0 231,166 + leuB MCAODC_01235 0.48 -3.1 231,166 + leuB MCAODC_01235 0.48 -1.3 231,166 + leuB MCAODC_01235 0.48 +0.6 231,167 - leuB MCAODC_01235 0.48 -2.7 231,167 - leuB MCAODC_01235 0.48 +0.5 231,196 + leuB MCAODC_01235 0.50 -2.9 231,209 - leuB MCAODC_01235 0.52 -2.8 231,256 - leuB MCAODC_01235 0.56 -1.2 231,313 + leuB MCAODC_01235 0.61 -0.4 231,313 + leuB MCAODC_01235 0.61 +2.3 231,314 - leuB MCAODC_01235 0.61 -0.2 231,314 - leuB MCAODC_01235 0.61 -2.4 231,317 + leuB MCAODC_01235 0.62 -0.2 231,318 - leuB MCAODC_01235 0.62 +1.5 231,318 - leuB MCAODC_01235 0.62 +0.6 231,318 - leuB MCAODC_01235 0.62 -0.5 231,318 - leuB MCAODC_01235 0.62 -1.3 231,318 - leuB MCAODC_01235 0.62 -0.9 231,318 - leuB MCAODC_01235 0.62 -1.1 231,318 - leuB MCAODC_01235 0.62 -0.9 231,318 - leuB MCAODC_01235 0.62 +1.2 231,318 - leuB MCAODC_01235 0.62 -2.6 231,318 - leuB MCAODC_01235 0.62 -0.2 231,318 - leuB MCAODC_01235 0.62 -1.8 231,318 - leuB MCAODC_01235 0.62 +0.3 231,318 - leuB MCAODC_01235 0.62 +0.0 231,346 + leuB MCAODC_01235 0.64 -1.5 231,482 + leuB MCAODC_01235 0.77 +1.8 231,482 + leuB MCAODC_01235 0.77 +0.0 231,482 + leuB MCAODC_01235 0.77 -1.4 231,482 + leuB MCAODC_01235 0.77 -0.9 231,482 + leuB MCAODC_01235 0.77 -1.7 231,482 + leuB MCAODC_01235 0.77 -0.9 231,483 - leuB MCAODC_01235 0.77 -0.1 231,483 - leuB MCAODC_01235 0.77 -0.1 231,521 - leuB MCAODC_01235 0.80 -2.6 231,634 - -2.8 231,660 + +0.2 231,685 + -1.0 231,685 + -2.9 231,685 + +1.9 231,716 + -3.1 231,717 - +0.4 231,717 - +2.0 231,717 - -0.6 231,734 + -1.3 231,734 + -0.1 231,734 + +0.5 231,734 + -0.7 231,735 - -1.7 231,735 - -0.5 231,735 - -0.4 231,735 - +0.7 231,745 - +0.2 231,755 - -0.3 231,779 + -0.5 231,779 + -2.3 231,780 - +0.9 231,780 - -2.4 231,780 - -1.5 231,780 - -1.0 231,780 - -0.8 231,780 - -0.7 231,784 + -0.2 231,785 - +0.4 231,812 + -0.3 231,812 + -1.4 231,812 + -0.7 231,812 + -0.2 231,813 - -1.8 231,813 - -0.1 231,813 - -1.5 231,813 - -1.1 231,814 + -0.6 231,814 + -0.3 231,814 + -0.2 231,814 + +0.9 231,814 + -1.5 231,814 + -0.5 231,814 + -0.8 231,814 + -1.3 231,815 - +0.0 231,815 - -1.2 231,816 + +0.6 231,816 + -3.0 231,816 + +0.6 231,816 + -3.2 231,817 - -0.1 231,817 - -1.3 231,817 - +0.5 231,817 - +0.4 231,819 - -1.3 231,936 + leuC1 MCAODC_01240 0.14 -1.1 231,937 - leuC1 MCAODC_01240 0.14 -0.4 232,030 + leuC1 MCAODC_01240 0.21 -1.7 232,049 - leuC1 MCAODC_01240 0.22 -0.5 232,067 + leuC1 MCAODC_01240 0.23 -2.5 232,067 + leuC1 MCAODC_01240 0.23 -0.7 232,068 - leuC1 MCAODC_01240 0.23 -1.1 232,128 + leuC1 MCAODC_01240 0.28 -0.1 232,193 + leuC1 MCAODC_01240 0.32 +0.0 232,193 + leuC1 MCAODC_01240 0.32 -0.2 232,194 - leuC1 MCAODC_01240 0.32 +0.5 232,285 - leuC1 MCAODC_01240 0.39 -1.5 232,299 + leuC1 MCAODC_01240 0.40 +1.6 232,370 + leuC1 MCAODC_01240 0.45 -3.1 232,371 - leuC1 MCAODC_01240 0.45 +0.8 232,402 - leuC1 MCAODC_01240 0.47 -0.4 232,402 - leuC1 MCAODC_01240 0.47 -2.7 232,458 + leuC1 MCAODC_01240 0.51 -0.8 232,458 + leuC1 MCAODC_01240 0.51 +0.6 232,458 + leuC1 MCAODC_01240 0.51 +0.7 232,458 + leuC1 MCAODC_01240 0.51 -0.0 232,458 + leuC1 MCAODC_01240 0.51 +0.5 232,458 + leuC1 MCAODC_01240 0.51 +2.8 232,458 + leuC1 MCAODC_01240 0.51 -1.6 232,458 + leuC1 MCAODC_01240 0.51 -1.2 232,458 + leuC1 MCAODC_01240 0.51 -2.1 232,458 + leuC1 MCAODC_01240 0.51 -0.5 232,458 + leuC1 MCAODC_01240 0.51 +0.1 232,459 - leuC1 MCAODC_01240 0.51 -0.4 232,459 - leuC1 MCAODC_01240 0.51 +0.9 232,462 + leuC1 MCAODC_01240 0.52 -2.0 232,614 + leuC1 MCAODC_01240 0.62 -0.9 232,647 + leuC1 MCAODC_01240 0.65 -0.4 232,711 + leuC1 MCAODC_01240 0.69 -2.0 232,711 + leuC1 MCAODC_01240 0.69 -2.6 232,711 + leuC1 MCAODC_01240 0.69 +0.0 232,711 + leuC1 MCAODC_01240 0.69 -0.1 232,711 + leuC1 MCAODC_01240 0.69 -0.3 232,712 - leuC1 MCAODC_01240 0.69 -2.0 232,712 - leuC1 MCAODC_01240 0.69 -0.4 232,713 + leuC1 MCAODC_01240 0.70 -1.7 232,713 + leuC1 MCAODC_01240 0.70 +0.1 232,714 - leuC1 MCAODC_01240 0.70 -1.1
Or see this region's nucleotide sequence