Experiment: WM_Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_13060 and MCAODC_13065 overlap by 17 nucleotides MCAODC_13065 and MCAODC_13070 are separated by 78 nucleotides MCAODC_13070 and MCAODC_13075 are separated by 35 nucleotides MCAODC_13075 and MCAODC_13080 overlap by 41 nucleotides MCAODC_13080 and MCAODC_13085 overlap by 4 nucleotides MCAODC_13085 and MCAODC_13090 are separated by 26 nucleotides
MCAODC_13060: MCAODC_13060 - integrase, at 2,592,254 to 2,593,423
_13060
MCAODC_13065: MCAODC_13065 - 50S ribosomal protein L7/L12, at 2,593,407 to 2,593,589
_13065
MCAODC_13070: MCAODC_13070 - DUF1627 domain-containing protein, at 2,593,668 to 2,594,045
_13070
MCAODC_13075: MCAODC_13075 - DUF1382 domain-containing protein, at 2,594,081 to 2,594,293
_13075
MCAODC_13080: MCAODC_13080 - adenine methylase, at 2,594,253 to 2,594,879
_13080
MCAODC_13085: MCAODC_13085 - hypothetical protein, at 2,594,876 to 2,595,079
_13085
MCAODC_13090: MCAODC_13090 - hypothetical protein, at 2,595,106 to 2,595,273
_13090
Position (kb)
2594
2595 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2593.084 kb on + strand, within MCAODC_13060 at 2593.092 kb on - strand, within MCAODC_13060 at 2593.150 kb on + strand, within MCAODC_13060 at 2593.156 kb on + strand, within MCAODC_13060 at 2593.210 kb on + strand, within MCAODC_13060 at 2593.237 kb on + strand, within MCAODC_13060 at 2593.251 kb on + strand, within MCAODC_13060 at 2593.276 kb on + strand, within MCAODC_13060 at 2593.334 kb on + strand at 2593.336 kb on + strand at 2593.336 kb on + strand at 2593.337 kb on - strand at 2593.340 kb on - strand at 2593.382 kb on + strand at 2593.382 kb on + strand at 2593.382 kb on + strand at 2593.383 kb on - strand at 2593.463 kb on + strand, within MCAODC_13065 at 2593.463 kb on + strand, within MCAODC_13065 at 2593.463 kb on + strand, within MCAODC_13065 at 2593.464 kb on - strand, within MCAODC_13065 at 2593.481 kb on + strand, within MCAODC_13065 at 2593.482 kb on - strand, within MCAODC_13065 at 2593.486 kb on - strand, within MCAODC_13065 at 2593.522 kb on + strand, within MCAODC_13065 at 2593.575 kb on + strand at 2593.575 kb on + strand at 2593.590 kb on - strand at 2593.607 kb on + strand at 2593.608 kb on - strand at 2593.613 kb on + strand at 2593.629 kb on + strand at 2593.629 kb on + strand at 2593.699 kb on + strand at 2593.700 kb on - strand at 2593.703 kb on + strand at 2593.704 kb on - strand at 2593.724 kb on + strand, within MCAODC_13070 at 2593.784 kb on + strand, within MCAODC_13070 at 2593.785 kb on - strand, within MCAODC_13070 at 2593.788 kb on + strand, within MCAODC_13070 at 2593.788 kb on + strand, within MCAODC_13070 at 2593.789 kb on - strand, within MCAODC_13070 at 2593.800 kb on + strand, within MCAODC_13070 at 2593.801 kb on - strand, within MCAODC_13070 at 2593.801 kb on - strand, within MCAODC_13070 at 2593.801 kb on - strand, within MCAODC_13070 at 2593.802 kb on + strand, within MCAODC_13070 at 2593.803 kb on - strand, within MCAODC_13070 at 2593.887 kb on + strand, within MCAODC_13070 at 2593.912 kb on - strand, within MCAODC_13070 at 2593.917 kb on + strand, within MCAODC_13070 at 2593.918 kb on - strand, within MCAODC_13070 at 2593.950 kb on - strand, within MCAODC_13070 at 2593.973 kb on + strand, within MCAODC_13070 at 2593.985 kb on + strand, within MCAODC_13070 at 2593.986 kb on - strand, within MCAODC_13070 at 2594.034 kb on + strand at 2594.065 kb on - strand at 2594.204 kb on + strand, within MCAODC_13075 at 2594.249 kb on + strand, within MCAODC_13075 at 2594.250 kb on - strand, within MCAODC_13075 at 2594.499 kb on + strand, within MCAODC_13080 at 2594.699 kb on + strand, within MCAODC_13080 at 2594.714 kb on + strand, within MCAODC_13080 at 2594.766 kb on - strand, within MCAODC_13080 at 2594.788 kb on + strand, within MCAODC_13080 at 2594.792 kb on + strand, within MCAODC_13080 at 2594.904 kb on + strand, within MCAODC_13085 at 2594.965 kb on + strand, within MCAODC_13085 at 2594.965 kb on + strand, within MCAODC_13085 at 2594.966 kb on - strand, within MCAODC_13085 at 2594.966 kb on - strand, within MCAODC_13085 at 2594.973 kb on + strand, within MCAODC_13085 at 2594.973 kb on + strand, within MCAODC_13085 at 2594.973 kb on + strand, within MCAODC_13085 at 2594.973 kb on + strand, within MCAODC_13085 at 2594.974 kb on - strand, within MCAODC_13085 at 2594.974 kb on - strand, within MCAODC_13085 at 2594.974 kb on - strand, within MCAODC_13085 at 2594.977 kb on + strand, within MCAODC_13085 at 2594.978 kb on - strand, within MCAODC_13085 at 2595.034 kb on - strand, within MCAODC_13085 at 2595.034 kb on - strand, within MCAODC_13085 at 2595.034 kb on - strand, within MCAODC_13085 at 2595.167 kb on - strand, within MCAODC_13090 at 2595.167 kb on - strand, within MCAODC_13090 at 2595.274 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas06 remove 2,593,084 + MCAODC_13060 0.71 +0.3 2,593,092 - MCAODC_13060 0.72 -2.0 2,593,150 + MCAODC_13060 0.77 +0.3 2,593,156 + MCAODC_13060 0.77 +1.2 2,593,210 + MCAODC_13060 0.82 +0.2 2,593,237 + MCAODC_13060 0.84 +0.8 2,593,251 + MCAODC_13060 0.85 -1.0 2,593,276 + MCAODC_13060 0.87 -2.2 2,593,334 + -0.2 2,593,336 + -1.5 2,593,336 + +1.4 2,593,337 - +0.8 2,593,340 - +1.1 2,593,382 + +0.1 2,593,382 + -0.6 2,593,382 + +0.8 2,593,383 - +0.7 2,593,463 + MCAODC_13065 0.31 -0.3 2,593,463 + MCAODC_13065 0.31 +0.4 2,593,463 + MCAODC_13065 0.31 +0.5 2,593,464 - MCAODC_13065 0.31 -0.4 2,593,481 + MCAODC_13065 0.40 -0.2 2,593,482 - MCAODC_13065 0.41 +2.0 2,593,486 - MCAODC_13065 0.43 -2.7 2,593,522 + MCAODC_13065 0.63 -1.2 2,593,575 + -0.6 2,593,575 + -0.4 2,593,590 - -1.4 2,593,607 + -1.7 2,593,608 - +1.4 2,593,613 + +0.9 2,593,629 + +1.5 2,593,629 + +0.1 2,593,699 + +0.7 2,593,700 - +1.8 2,593,703 + +1.6 2,593,704 - +0.6 2,593,724 + MCAODC_13070 0.15 -0.5 2,593,784 + MCAODC_13070 0.31 +1.5 2,593,785 - MCAODC_13070 0.31 +1.3 2,593,788 + MCAODC_13070 0.32 -2.7 2,593,788 + MCAODC_13070 0.32 +1.1 2,593,789 - MCAODC_13070 0.32 +0.6 2,593,800 + MCAODC_13070 0.35 -0.0 2,593,801 - MCAODC_13070 0.35 +1.3 2,593,801 - MCAODC_13070 0.35 -0.5 2,593,801 - MCAODC_13070 0.35 -1.2 2,593,802 + MCAODC_13070 0.35 +0.6 2,593,803 - MCAODC_13070 0.36 -0.8 2,593,887 + MCAODC_13070 0.58 +1.6 2,593,912 - MCAODC_13070 0.65 +1.6 2,593,917 + MCAODC_13070 0.66 -3.1 2,593,918 - MCAODC_13070 0.66 +0.5 2,593,950 - MCAODC_13070 0.75 -0.5 2,593,973 + MCAODC_13070 0.81 -0.2 2,593,985 + MCAODC_13070 0.84 +1.4 2,593,986 - MCAODC_13070 0.84 +2.5 2,594,034 + +1.0 2,594,065 - +0.8 2,594,204 + MCAODC_13075 0.58 +4.5 2,594,249 + MCAODC_13075 0.79 +0.5 2,594,250 - MCAODC_13075 0.79 +1.7 2,594,499 + MCAODC_13080 0.39 +1.5 2,594,699 + MCAODC_13080 0.71 +0.5 2,594,714 + MCAODC_13080 0.74 -0.2 2,594,766 - MCAODC_13080 0.82 -1.4 2,594,788 + MCAODC_13080 0.85 +0.2 2,594,792 + MCAODC_13080 0.86 +0.2 2,594,904 + MCAODC_13085 0.14 -0.5 2,594,965 + MCAODC_13085 0.44 +1.1 2,594,965 + MCAODC_13085 0.44 -1.1 2,594,966 - MCAODC_13085 0.44 -2.6 2,594,966 - MCAODC_13085 0.44 -2.1 2,594,973 + MCAODC_13085 0.48 -0.9 2,594,973 + MCAODC_13085 0.48 +0.6 2,594,973 + MCAODC_13085 0.48 -3.0 2,594,973 + MCAODC_13085 0.48 +1.6 2,594,974 - MCAODC_13085 0.48 +0.6 2,594,974 - MCAODC_13085 0.48 -0.4 2,594,974 - MCAODC_13085 0.48 +0.5 2,594,977 + MCAODC_13085 0.50 +1.0 2,594,978 - MCAODC_13085 0.50 +1.7 2,595,034 - MCAODC_13085 0.77 -1.0 2,595,034 - MCAODC_13085 0.77 +0.6 2,595,034 - MCAODC_13085 0.77 -0.2 2,595,167 - MCAODC_13090 0.36 -0.7 2,595,167 - MCAODC_13090 0.36 -0.7 2,595,274 + -0.4
Or see this region's nucleotide sequence