Strain Fitness in Escherichia coli ECRC101 around MCAODC_13075

Experiment: WM_Bas06

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_13060 and MCAODC_13065 overlap by 17 nucleotidesMCAODC_13065 and MCAODC_13070 are separated by 78 nucleotidesMCAODC_13070 and MCAODC_13075 are separated by 35 nucleotidesMCAODC_13075 and MCAODC_13080 overlap by 41 nucleotidesMCAODC_13080 and MCAODC_13085 overlap by 4 nucleotidesMCAODC_13085 and MCAODC_13090 are separated by 26 nucleotides MCAODC_13060: MCAODC_13060 - integrase, at 2,592,254 to 2,593,423 _13060 MCAODC_13065: MCAODC_13065 - 50S ribosomal protein L7/L12, at 2,593,407 to 2,593,589 _13065 MCAODC_13070: MCAODC_13070 - DUF1627 domain-containing protein, at 2,593,668 to 2,594,045 _13070 MCAODC_13075: MCAODC_13075 - DUF1382 domain-containing protein, at 2,594,081 to 2,594,293 _13075 MCAODC_13080: MCAODC_13080 - adenine methylase, at 2,594,253 to 2,594,879 _13080 MCAODC_13085: MCAODC_13085 - hypothetical protein, at 2,594,876 to 2,595,079 _13085 MCAODC_13090: MCAODC_13090 - hypothetical protein, at 2,595,106 to 2,595,273 _13090 Position (kb) 2594 2595Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2593.084 kb on + strand, within MCAODC_13060at 2593.092 kb on - strand, within MCAODC_13060at 2593.150 kb on + strand, within MCAODC_13060at 2593.156 kb on + strand, within MCAODC_13060at 2593.210 kb on + strand, within MCAODC_13060at 2593.237 kb on + strand, within MCAODC_13060at 2593.251 kb on + strand, within MCAODC_13060at 2593.276 kb on + strand, within MCAODC_13060at 2593.334 kb on + strandat 2593.336 kb on + strandat 2593.336 kb on + strandat 2593.337 kb on - strandat 2593.340 kb on - strandat 2593.382 kb on + strandat 2593.382 kb on + strandat 2593.382 kb on + strandat 2593.383 kb on - strandat 2593.463 kb on + strand, within MCAODC_13065at 2593.463 kb on + strand, within MCAODC_13065at 2593.463 kb on + strand, within MCAODC_13065at 2593.464 kb on - strand, within MCAODC_13065at 2593.481 kb on + strand, within MCAODC_13065at 2593.482 kb on - strand, within MCAODC_13065at 2593.486 kb on - strand, within MCAODC_13065at 2593.522 kb on + strand, within MCAODC_13065at 2593.575 kb on + strandat 2593.575 kb on + strandat 2593.590 kb on - strandat 2593.607 kb on + strandat 2593.608 kb on - strandat 2593.613 kb on + strandat 2593.629 kb on + strandat 2593.629 kb on + strandat 2593.699 kb on + strandat 2593.700 kb on - strandat 2593.703 kb on + strandat 2593.704 kb on - strandat 2593.724 kb on + strand, within MCAODC_13070at 2593.784 kb on + strand, within MCAODC_13070at 2593.785 kb on - strand, within MCAODC_13070at 2593.788 kb on + strand, within MCAODC_13070at 2593.788 kb on + strand, within MCAODC_13070at 2593.789 kb on - strand, within MCAODC_13070at 2593.800 kb on + strand, within MCAODC_13070at 2593.801 kb on - strand, within MCAODC_13070at 2593.801 kb on - strand, within MCAODC_13070at 2593.801 kb on - strand, within MCAODC_13070at 2593.802 kb on + strand, within MCAODC_13070at 2593.803 kb on - strand, within MCAODC_13070at 2593.887 kb on + strand, within MCAODC_13070at 2593.912 kb on - strand, within MCAODC_13070at 2593.917 kb on + strand, within MCAODC_13070at 2593.918 kb on - strand, within MCAODC_13070at 2593.950 kb on - strand, within MCAODC_13070at 2593.973 kb on + strand, within MCAODC_13070at 2593.985 kb on + strand, within MCAODC_13070at 2593.986 kb on - strand, within MCAODC_13070at 2594.034 kb on + strandat 2594.065 kb on - strandat 2594.204 kb on + strand, within MCAODC_13075at 2594.249 kb on + strand, within MCAODC_13075at 2594.250 kb on - strand, within MCAODC_13075at 2594.499 kb on + strand, within MCAODC_13080at 2594.699 kb on + strand, within MCAODC_13080at 2594.714 kb on + strand, within MCAODC_13080at 2594.766 kb on - strand, within MCAODC_13080at 2594.788 kb on + strand, within MCAODC_13080at 2594.792 kb on + strand, within MCAODC_13080at 2594.904 kb on + strand, within MCAODC_13085at 2594.965 kb on + strand, within MCAODC_13085at 2594.965 kb on + strand, within MCAODC_13085at 2594.966 kb on - strand, within MCAODC_13085at 2594.966 kb on - strand, within MCAODC_13085at 2594.973 kb on + strand, within MCAODC_13085at 2594.973 kb on + strand, within MCAODC_13085at 2594.973 kb on + strand, within MCAODC_13085at 2594.973 kb on + strand, within MCAODC_13085at 2594.974 kb on - strand, within MCAODC_13085at 2594.974 kb on - strand, within MCAODC_13085at 2594.974 kb on - strand, within MCAODC_13085at 2594.977 kb on + strand, within MCAODC_13085at 2594.978 kb on - strand, within MCAODC_13085at 2595.034 kb on - strand, within MCAODC_13085at 2595.034 kb on - strand, within MCAODC_13085at 2595.034 kb on - strand, within MCAODC_13085at 2595.167 kb on - strand, within MCAODC_13090at 2595.167 kb on - strand, within MCAODC_13090at 2595.274 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas06
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2,593,084 + MCAODC_13060 0.71 +0.3
2,593,092 - MCAODC_13060 0.72 -2.0
2,593,150 + MCAODC_13060 0.77 +0.3
2,593,156 + MCAODC_13060 0.77 +1.2
2,593,210 + MCAODC_13060 0.82 +0.2
2,593,237 + MCAODC_13060 0.84 +0.8
2,593,251 + MCAODC_13060 0.85 -1.0
2,593,276 + MCAODC_13060 0.87 -2.2
2,593,334 + -0.2
2,593,336 + -1.5
2,593,336 + +1.4
2,593,337 - +0.8
2,593,340 - +1.1
2,593,382 + +0.1
2,593,382 + -0.6
2,593,382 + +0.8
2,593,383 - +0.7
2,593,463 + MCAODC_13065 0.31 -0.3
2,593,463 + MCAODC_13065 0.31 +0.4
2,593,463 + MCAODC_13065 0.31 +0.5
2,593,464 - MCAODC_13065 0.31 -0.4
2,593,481 + MCAODC_13065 0.40 -0.2
2,593,482 - MCAODC_13065 0.41 +2.0
2,593,486 - MCAODC_13065 0.43 -2.7
2,593,522 + MCAODC_13065 0.63 -1.2
2,593,575 + -0.6
2,593,575 + -0.4
2,593,590 - -1.4
2,593,607 + -1.7
2,593,608 - +1.4
2,593,613 + +0.9
2,593,629 + +1.5
2,593,629 + +0.1
2,593,699 + +0.7
2,593,700 - +1.8
2,593,703 + +1.6
2,593,704 - +0.6
2,593,724 + MCAODC_13070 0.15 -0.5
2,593,784 + MCAODC_13070 0.31 +1.5
2,593,785 - MCAODC_13070 0.31 +1.3
2,593,788 + MCAODC_13070 0.32 -2.7
2,593,788 + MCAODC_13070 0.32 +1.1
2,593,789 - MCAODC_13070 0.32 +0.6
2,593,800 + MCAODC_13070 0.35 -0.0
2,593,801 - MCAODC_13070 0.35 +1.3
2,593,801 - MCAODC_13070 0.35 -0.5
2,593,801 - MCAODC_13070 0.35 -1.2
2,593,802 + MCAODC_13070 0.35 +0.6
2,593,803 - MCAODC_13070 0.36 -0.8
2,593,887 + MCAODC_13070 0.58 +1.6
2,593,912 - MCAODC_13070 0.65 +1.6
2,593,917 + MCAODC_13070 0.66 -3.1
2,593,918 - MCAODC_13070 0.66 +0.5
2,593,950 - MCAODC_13070 0.75 -0.5
2,593,973 + MCAODC_13070 0.81 -0.2
2,593,985 + MCAODC_13070 0.84 +1.4
2,593,986 - MCAODC_13070 0.84 +2.5
2,594,034 + +1.0
2,594,065 - +0.8
2,594,204 + MCAODC_13075 0.58 +4.5
2,594,249 + MCAODC_13075 0.79 +0.5
2,594,250 - MCAODC_13075 0.79 +1.7
2,594,499 + MCAODC_13080 0.39 +1.5
2,594,699 + MCAODC_13080 0.71 +0.5
2,594,714 + MCAODC_13080 0.74 -0.2
2,594,766 - MCAODC_13080 0.82 -1.4
2,594,788 + MCAODC_13080 0.85 +0.2
2,594,792 + MCAODC_13080 0.86 +0.2
2,594,904 + MCAODC_13085 0.14 -0.5
2,594,965 + MCAODC_13085 0.44 +1.1
2,594,965 + MCAODC_13085 0.44 -1.1
2,594,966 - MCAODC_13085 0.44 -2.6
2,594,966 - MCAODC_13085 0.44 -2.1
2,594,973 + MCAODC_13085 0.48 -0.9
2,594,973 + MCAODC_13085 0.48 +0.6
2,594,973 + MCAODC_13085 0.48 -3.0
2,594,973 + MCAODC_13085 0.48 +1.6
2,594,974 - MCAODC_13085 0.48 +0.6
2,594,974 - MCAODC_13085 0.48 -0.4
2,594,974 - MCAODC_13085 0.48 +0.5
2,594,977 + MCAODC_13085 0.50 +1.0
2,594,978 - MCAODC_13085 0.50 +1.7
2,595,034 - MCAODC_13085 0.77 -1.0
2,595,034 - MCAODC_13085 0.77 +0.6
2,595,034 - MCAODC_13085 0.77 -0.2
2,595,167 - MCAODC_13090 0.36 -0.7
2,595,167 - MCAODC_13090 0.36 -0.7
2,595,274 + -0.4

Or see this region's nucleotide sequence