Experiment: Ying_AminoAcid20 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS24165 and ABIE41_RS24170 are separated by 206 nucleotides ABIE41_RS24170 and ABIE41_RS24175 overlap by 4 nucleotides ABIE41_RS24175 and ABIE41_RS24180 overlap by 4 nucleotides
ABIE41_RS24165: ABIE41_RS24165 - methyl-accepting chemotaxis protein, at 4,990,533 to 4,993,217
_RS24165
ABIE41_RS24170: ABIE41_RS24170 - 5-oxoprolinase subunit PxpA, at 4,993,424 to 4,994,182
_RS24170
ABIE41_RS24175: ABIE41_RS24175 - allophanate hydrolase subunit 1, at 4,994,179 to 4,994,916
_RS24175
ABIE41_RS24180: ABIE41_RS24180 - biotin-dependent carboxyltransferase family protein, at 4,994,913 to 4,995,935
_RS24180
Position (kb) 4994
4995 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4993.179 kb on + strand at 4993.179 kb on + strand at 4993.179 kb on + strand at 4993.179 kb on + strand at 4993.180 kb on - strand at 4993.180 kb on - strand at 4993.180 kb on - strand at 4993.180 kb on - strand at 4993.180 kb on - strand at 4993.180 kb on - strand at 4993.181 kb on - strand at 4993.369 kb on + strand at 4993.369 kb on + strand at 4993.369 kb on + strand at 4993.370 kb on - strand at 4993.375 kb on + strand at 4993.375 kb on + strand at 4993.376 kb on - strand at 4993.376 kb on - strand at 4993.472 kb on + strand at 4993.472 kb on + strand at 4993.473 kb on - strand at 4993.724 kb on + strand, within ABIE41_RS24170 at 4993.724 kb on + strand, within ABIE41_RS24170 at 4993.745 kb on + strand, within ABIE41_RS24170 at 4993.745 kb on + strand, within ABIE41_RS24170 at 4993.745 kb on + strand, within ABIE41_RS24170 at 4993.745 kb on + strand, within ABIE41_RS24170 at 4993.746 kb on - strand, within ABIE41_RS24170 at 4993.746 kb on - strand, within ABIE41_RS24170 at 4993.746 kb on - strand, within ABIE41_RS24170 at 4993.746 kb on - strand, within ABIE41_RS24170 at 4993.746 kb on - strand, within ABIE41_RS24170 at 4993.934 kb on + strand, within ABIE41_RS24170 at 4993.935 kb on - strand, within ABIE41_RS24170 at 4994.191 kb on - strand at 4994.347 kb on + strand, within ABIE41_RS24175 at 4994.347 kb on + strand, within ABIE41_RS24175 at 4994.348 kb on - strand, within ABIE41_RS24175 at 4994.369 kb on - strand, within ABIE41_RS24175 at 4994.482 kb on + strand, within ABIE41_RS24175 at 4994.482 kb on + strand, within ABIE41_RS24175 at 4994.483 kb on - strand, within ABIE41_RS24175 at 4994.584 kb on + strand, within ABIE41_RS24175 at 4994.584 kb on + strand, within ABIE41_RS24175 at 4994.584 kb on + strand, within ABIE41_RS24175 at 4994.584 kb on + strand, within ABIE41_RS24175 at 4994.584 kb on + strand, within ABIE41_RS24175 at 4994.584 kb on + strand, within ABIE41_RS24175 at 4994.584 kb on + strand, within ABIE41_RS24175 at 4994.585 kb on - strand, within ABIE41_RS24175 at 4994.585 kb on - strand, within ABIE41_RS24175 at 4994.586 kb on + strand, within ABIE41_RS24175 at 4994.586 kb on + strand, within ABIE41_RS24175 at 4994.586 kb on + strand, within ABIE41_RS24175 at 4994.586 kb on + strand, within ABIE41_RS24175 at 4994.586 kb on + strand, within ABIE41_RS24175 at 4994.586 kb on + strand, within ABIE41_RS24175 at 4994.586 kb on + strand, within ABIE41_RS24175 at 4994.587 kb on - strand, within ABIE41_RS24175 at 4994.587 kb on - strand, within ABIE41_RS24175 at 4994.587 kb on - strand, within ABIE41_RS24175 at 4994.587 kb on - strand, within ABIE41_RS24175 at 4994.587 kb on - strand, within ABIE41_RS24175 at 4994.587 kb on - strand, within ABIE41_RS24175 at 4994.587 kb on - strand, within ABIE41_RS24175 at 4994.587 kb on - strand, within ABIE41_RS24175 at 4994.587 kb on - strand, within ABIE41_RS24175 at 4994.587 kb on - strand, within ABIE41_RS24175 at 4994.587 kb on - strand, within ABIE41_RS24175 at 4994.587 kb on - strand, within ABIE41_RS24175 at 4994.587 kb on - strand, within ABIE41_RS24175 at 4994.587 kb on - strand, within ABIE41_RS24175 at 4994.590 kb on + strand, within ABIE41_RS24175 at 4994.746 kb on + strand, within ABIE41_RS24175 at 4994.746 kb on + strand, within ABIE41_RS24175 at 4994.746 kb on + strand, within ABIE41_RS24175 at 4994.746 kb on + strand, within ABIE41_RS24175 at 4994.746 kb on + strand, within ABIE41_RS24175 at 4994.746 kb on + strand, within ABIE41_RS24175 at 4994.746 kb on + strand, within ABIE41_RS24175 at 4994.747 kb on - strand, within ABIE41_RS24175 at 4994.747 kb on - strand, within ABIE41_RS24175 at 4994.747 kb on - strand, within ABIE41_RS24175 at 4994.747 kb on - strand, within ABIE41_RS24175 at 4994.747 kb on - strand, within ABIE41_RS24175 at 4994.747 kb on - strand, within ABIE41_RS24175 at 4994.747 kb on - strand, within ABIE41_RS24175 at 4994.747 kb on - strand, within ABIE41_RS24175 at 4994.747 kb on - strand, within ABIE41_RS24175 at 4994.776 kb on + strand, within ABIE41_RS24175 at 4994.979 kb on + strand at 4994.979 kb on + strand at 4994.979 kb on + strand at 4994.980 kb on - strand at 4994.980 kb on - strand at 4994.989 kb on - strand at 4995.255 kb on + strand, within ABIE41_RS24180 at 4995.255 kb on + strand, within ABIE41_RS24180 at 4995.256 kb on - strand, within ABIE41_RS24180
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1 remove 4,993,179 + -0.7 4,993,179 + +0.2 4,993,179 + -1.1 4,993,179 + +0.4 4,993,180 - +0.8 4,993,180 - -1.1 4,993,180 - +0.4 4,993,180 - +0.6 4,993,180 - -0.3 4,993,180 - +0.3 4,993,181 - -2.0 4,993,369 + +2.8 4,993,369 + +0.3 4,993,369 + -0.4 4,993,370 - -1.9 4,993,375 + +0.2 4,993,375 + +0.5 4,993,376 - -1.0 4,993,376 - -0.7 4,993,472 + +1.3 4,993,472 + +0.5 4,993,473 - +1.0 4,993,724 + ABIE41_RS24170 0.40 -0.8 4,993,724 + ABIE41_RS24170 0.40 -0.0 4,993,745 + ABIE41_RS24170 0.42 -0.2 4,993,745 + ABIE41_RS24170 0.42 -0.0 4,993,745 + ABIE41_RS24170 0.42 -0.4 4,993,745 + ABIE41_RS24170 0.42 -1.4 4,993,746 - ABIE41_RS24170 0.42 -0.5 4,993,746 - ABIE41_RS24170 0.42 -0.4 4,993,746 - ABIE41_RS24170 0.42 +1.1 4,993,746 - ABIE41_RS24170 0.42 +0.3 4,993,746 - ABIE41_RS24170 0.42 +0.0 4,993,934 + ABIE41_RS24170 0.67 +0.6 4,993,935 - ABIE41_RS24170 0.67 -1.4 4,994,191 - +0.8 4,994,347 + ABIE41_RS24175 0.23 +0.4 4,994,347 + ABIE41_RS24175 0.23 +0.4 4,994,348 - ABIE41_RS24175 0.23 -0.9 4,994,369 - ABIE41_RS24175 0.26 -1.7 4,994,482 + ABIE41_RS24175 0.41 -0.1 4,994,482 + ABIE41_RS24175 0.41 -0.1 4,994,483 - ABIE41_RS24175 0.41 +1.0 4,994,584 + ABIE41_RS24175 0.55 -0.1 4,994,584 + ABIE41_RS24175 0.55 +0.2 4,994,584 + ABIE41_RS24175 0.55 +1.6 4,994,584 + ABIE41_RS24175 0.55 +0.6 4,994,584 + ABIE41_RS24175 0.55 -0.2 4,994,584 + ABIE41_RS24175 0.55 +1.2 4,994,584 + ABIE41_RS24175 0.55 -0.0 4,994,585 - ABIE41_RS24175 0.55 +1.2 4,994,585 - ABIE41_RS24175 0.55 -0.0 4,994,586 + ABIE41_RS24175 0.55 +1.0 4,994,586 + ABIE41_RS24175 0.55 +0.4 4,994,586 + ABIE41_RS24175 0.55 +0.5 4,994,586 + ABIE41_RS24175 0.55 -0.5 4,994,586 + ABIE41_RS24175 0.55 -0.0 4,994,586 + ABIE41_RS24175 0.55 -0.1 4,994,586 + ABIE41_RS24175 0.55 +0.4 4,994,587 - ABIE41_RS24175 0.55 +0.6 4,994,587 - ABIE41_RS24175 0.55 -1.7 4,994,587 - ABIE41_RS24175 0.55 +0.0 4,994,587 - ABIE41_RS24175 0.55 -0.9 4,994,587 - ABIE41_RS24175 0.55 -0.6 4,994,587 - ABIE41_RS24175 0.55 -1.4 4,994,587 - ABIE41_RS24175 0.55 +0.2 4,994,587 - ABIE41_RS24175 0.55 +0.6 4,994,587 - ABIE41_RS24175 0.55 +0.7 4,994,587 - ABIE41_RS24175 0.55 -1.2 4,994,587 - ABIE41_RS24175 0.55 +1.7 4,994,587 - ABIE41_RS24175 0.55 +0.3 4,994,587 - ABIE41_RS24175 0.55 +3.6 4,994,587 - ABIE41_RS24175 0.55 +0.7 4,994,590 + ABIE41_RS24175 0.56 -0.3 4,994,746 + ABIE41_RS24175 0.77 +1.2 4,994,746 + ABIE41_RS24175 0.77 -2.5 4,994,746 + ABIE41_RS24175 0.77 -0.0 4,994,746 + ABIE41_RS24175 0.77 -0.5 4,994,746 + ABIE41_RS24175 0.77 +0.4 4,994,746 + ABIE41_RS24175 0.77 +0.6 4,994,746 + ABIE41_RS24175 0.77 +0.2 4,994,747 - ABIE41_RS24175 0.77 +0.4 4,994,747 - ABIE41_RS24175 0.77 +1.0 4,994,747 - ABIE41_RS24175 0.77 +0.0 4,994,747 - ABIE41_RS24175 0.77 +2.2 4,994,747 - ABIE41_RS24175 0.77 +1.8 4,994,747 - ABIE41_RS24175 0.77 -0.9 4,994,747 - ABIE41_RS24175 0.77 -0.4 4,994,747 - ABIE41_RS24175 0.77 +0.9 4,994,747 - ABIE41_RS24175 0.77 +1.0 4,994,776 + ABIE41_RS24175 0.81 -1.2 4,994,979 + +3.9 4,994,979 + -0.1 4,994,979 + -0.1 4,994,980 - -0.2 4,994,980 - -1.0 4,994,989 - +0.3 4,995,255 + ABIE41_RS24180 0.33 +0.6 4,995,255 + ABIE41_RS24180 0.33 +0.8 4,995,256 - ABIE41_RS24180 0.34 -0.4
Or see this region's nucleotide sequence