Experiment: Ying_AminoAcid20 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS23645 and ABIE41_RS23650 are separated by 99 nucleotides ABIE41_RS23650 and ABIE41_RS23655 overlap by 4 nucleotides ABIE41_RS23655 and ABIE41_RS23660 are separated by 8 nucleotides
ABIE41_RS23645: ABIE41_RS23645 - histidine ammonia-lyase, at 4,872,218 to 4,873,753
_RS23645
ABIE41_RS23650: ABIE41_RS23650 - N-formylglutamate deformylase, at 4,873,853 to 4,874,659
_RS23650
ABIE41_RS23655: ABIE41_RS23655 - urocanate hydratase, at 4,874,656 to 4,876,326
_RS23655
ABIE41_RS23660: ABIE41_RS23660 - flavin oxidoreductase, at 4,876,335 to 4,877,483
_RS23660
Position (kb) 4874
4875
4876
4877 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4873.656 kb on - strand at 4874.003 kb on + strand, within ABIE41_RS23650 at 4874.003 kb on + strand, within ABIE41_RS23650 at 4874.003 kb on + strand, within ABIE41_RS23650 at 4874.003 kb on + strand, within ABIE41_RS23650 at 4874.003 kb on + strand, within ABIE41_RS23650 at 4874.004 kb on - strand, within ABIE41_RS23650 at 4874.004 kb on - strand, within ABIE41_RS23650 at 4874.099 kb on + strand, within ABIE41_RS23650 at 4874.131 kb on + strand, within ABIE41_RS23650 at 4874.208 kb on - strand, within ABIE41_RS23650 at 4874.219 kb on + strand, within ABIE41_RS23650 at 4874.271 kb on - strand, within ABIE41_RS23650 at 4874.475 kb on - strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.532 kb on - strand, within ABIE41_RS23650 at 4874.532 kb on - strand, within ABIE41_RS23650 at 4874.532 kb on - strand, within ABIE41_RS23650 at 4874.532 kb on - strand, within ABIE41_RS23650 at 4874.532 kb on - strand, within ABIE41_RS23650 at 4874.803 kb on + strand at 4874.983 kb on + strand, within ABIE41_RS23655 at 4874.984 kb on - strand, within ABIE41_RS23655 at 4875.015 kb on + strand, within ABIE41_RS23655 at 4875.034 kb on + strand, within ABIE41_RS23655 at 4875.035 kb on - strand, within ABIE41_RS23655 at 4875.035 kb on - strand, within ABIE41_RS23655 at 4875.035 kb on - strand, within ABIE41_RS23655 at 4875.064 kb on + strand, within ABIE41_RS23655 at 4875.064 kb on + strand, within ABIE41_RS23655 at 4875.064 kb on + strand, within ABIE41_RS23655 at 4875.065 kb on - strand, within ABIE41_RS23655 at 4875.065 kb on - strand, within ABIE41_RS23655 at 4875.065 kb on - strand, within ABIE41_RS23655 at 4875.065 kb on - strand, within ABIE41_RS23655 at 4875.065 kb on - strand, within ABIE41_RS23655 at 4875.065 kb on - strand, within ABIE41_RS23655 at 4875.065 kb on - strand, within ABIE41_RS23655 at 4875.097 kb on + strand, within ABIE41_RS23655 at 4875.097 kb on + strand, within ABIE41_RS23655 at 4875.098 kb on - strand, within ABIE41_RS23655 at 4875.098 kb on - strand, within ABIE41_RS23655 at 4875.098 kb on - strand, within ABIE41_RS23655 at 4875.098 kb on - strand, within ABIE41_RS23655 at 4875.130 kb on + strand, within ABIE41_RS23655 at 4875.130 kb on + strand, within ABIE41_RS23655 at 4875.231 kb on - strand, within ABIE41_RS23655 at 4875.280 kb on + strand, within ABIE41_RS23655 at 4875.470 kb on - strand, within ABIE41_RS23655 at 4875.617 kb on - strand, within ABIE41_RS23655 at 4875.694 kb on + strand, within ABIE41_RS23655 at 4875.694 kb on + strand, within ABIE41_RS23655 at 4875.694 kb on + strand, within ABIE41_RS23655 at 4875.694 kb on + strand, within ABIE41_RS23655 at 4875.694 kb on + strand, within ABIE41_RS23655 at 4875.695 kb on - strand, within ABIE41_RS23655 at 4875.697 kb on - strand, within ABIE41_RS23655 at 4875.769 kb on + strand, within ABIE41_RS23655 at 4875.769 kb on + strand, within ABIE41_RS23655 at 4875.769 kb on + strand, within ABIE41_RS23655 at 4875.769 kb on + strand, within ABIE41_RS23655 at 4875.769 kb on + strand, within ABIE41_RS23655 at 4875.770 kb on - strand, within ABIE41_RS23655 at 4876.141 kb on + strand, within ABIE41_RS23655 at 4876.319 kb on + strand at 4876.319 kb on + strand at 4876.319 kb on + strand at 4876.320 kb on - strand at 4876.320 kb on - strand at 4876.482 kb on + strand, within ABIE41_RS23660 at 4876.482 kb on + strand, within ABIE41_RS23660 at 4876.675 kb on + strand, within ABIE41_RS23660 at 4876.676 kb on - strand, within ABIE41_RS23660 at 4876.676 kb on - strand, within ABIE41_RS23660 at 4876.735 kb on + strand, within ABIE41_RS23660 at 4876.735 kb on + strand, within ABIE41_RS23660 at 4876.735 kb on + strand, within ABIE41_RS23660 at 4876.736 kb on - strand, within ABIE41_RS23660 at 4876.736 kb on - strand, within ABIE41_RS23660 at 4876.736 kb on - strand, within ABIE41_RS23660 at 4876.792 kb on + strand, within ABIE41_RS23660 at 4876.792 kb on + strand, within ABIE41_RS23660 at 4876.969 kb on + strand, within ABIE41_RS23660 at 4876.969 kb on + strand, within ABIE41_RS23660 at 4876.970 kb on - strand, within ABIE41_RS23660 at 4877.180 kb on - strand, within ABIE41_RS23660 at 4877.180 kb on - strand, within ABIE41_RS23660 at 4877.180 kb on - strand, within ABIE41_RS23660 at 4877.180 kb on - strand, within ABIE41_RS23660 at 4877.302 kb on + strand, within ABIE41_RS23660 at 4877.302 kb on + strand, within ABIE41_RS23660 at 4877.303 kb on - strand, within ABIE41_RS23660 at 4877.303 kb on - strand, within ABIE41_RS23660
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1 remove 4,873,656 - -0.5 4,874,003 + ABIE41_RS23650 0.19 -1.0 4,874,003 + ABIE41_RS23650 0.19 +1.1 4,874,003 + ABIE41_RS23650 0.19 +0.1 4,874,003 + ABIE41_RS23650 0.19 +0.4 4,874,003 + ABIE41_RS23650 0.19 -0.2 4,874,004 - ABIE41_RS23650 0.19 +1.9 4,874,004 - ABIE41_RS23650 0.19 -0.5 4,874,099 + ABIE41_RS23650 0.30 -0.5 4,874,131 + ABIE41_RS23650 0.34 -1.2 4,874,208 - ABIE41_RS23650 0.44 -0.0 4,874,219 + ABIE41_RS23650 0.45 -0.1 4,874,271 - ABIE41_RS23650 0.52 +0.4 4,874,475 - ABIE41_RS23650 0.77 +1.4 4,874,531 + ABIE41_RS23650 0.84 -0.2 4,874,531 + ABIE41_RS23650 0.84 +0.2 4,874,531 + ABIE41_RS23650 0.84 +0.3 4,874,531 + ABIE41_RS23650 0.84 -2.8 4,874,531 + ABIE41_RS23650 0.84 -0.0 4,874,531 + ABIE41_RS23650 0.84 -0.9 4,874,531 + ABIE41_RS23650 0.84 -0.3 4,874,531 + ABIE41_RS23650 0.84 -0.0 4,874,531 + ABIE41_RS23650 0.84 -0.9 4,874,532 - ABIE41_RS23650 0.84 +0.5 4,874,532 - ABIE41_RS23650 0.84 -0.1 4,874,532 - ABIE41_RS23650 0.84 -2.2 4,874,532 - ABIE41_RS23650 0.84 -1.9 4,874,532 - ABIE41_RS23650 0.84 -1.0 4,874,803 + -0.8 4,874,983 + ABIE41_RS23655 0.20 +0.4 4,874,984 - ABIE41_RS23655 0.20 -0.6 4,875,015 + ABIE41_RS23655 0.21 -0.2 4,875,034 + ABIE41_RS23655 0.23 +2.2 4,875,035 - ABIE41_RS23655 0.23 -0.0 4,875,035 - ABIE41_RS23655 0.23 -0.3 4,875,035 - ABIE41_RS23655 0.23 +0.6 4,875,064 + ABIE41_RS23655 0.24 -0.6 4,875,064 + ABIE41_RS23655 0.24 +0.8 4,875,064 + ABIE41_RS23655 0.24 +0.1 4,875,065 - ABIE41_RS23655 0.24 -1.6 4,875,065 - ABIE41_RS23655 0.24 -0.7 4,875,065 - ABIE41_RS23655 0.24 -0.7 4,875,065 - ABIE41_RS23655 0.24 +0.8 4,875,065 - ABIE41_RS23655 0.24 +0.5 4,875,065 - ABIE41_RS23655 0.24 -0.6 4,875,065 - ABIE41_RS23655 0.24 -0.8 4,875,097 + ABIE41_RS23655 0.26 -2.6 4,875,097 + ABIE41_RS23655 0.26 +1.8 4,875,098 - ABIE41_RS23655 0.26 -1.7 4,875,098 - ABIE41_RS23655 0.26 -0.5 4,875,098 - ABIE41_RS23655 0.26 -2.9 4,875,098 - ABIE41_RS23655 0.26 +0.0 4,875,130 + ABIE41_RS23655 0.28 -0.0 4,875,130 + ABIE41_RS23655 0.28 -0.8 4,875,231 - ABIE41_RS23655 0.34 +0.6 4,875,280 + ABIE41_RS23655 0.37 -1.7 4,875,470 - ABIE41_RS23655 0.49 -0.1 4,875,617 - ABIE41_RS23655 0.58 -0.8 4,875,694 + ABIE41_RS23655 0.62 +0.4 4,875,694 + ABIE41_RS23655 0.62 -1.7 4,875,694 + ABIE41_RS23655 0.62 -1.4 4,875,694 + ABIE41_RS23655 0.62 +0.1 4,875,694 + ABIE41_RS23655 0.62 +0.9 4,875,695 - ABIE41_RS23655 0.62 -0.7 4,875,697 - ABIE41_RS23655 0.62 -0.3 4,875,769 + ABIE41_RS23655 0.67 +0.0 4,875,769 + ABIE41_RS23655 0.67 -0.1 4,875,769 + ABIE41_RS23655 0.67 +0.5 4,875,769 + ABIE41_RS23655 0.67 -2.0 4,875,769 + ABIE41_RS23655 0.67 -0.7 4,875,770 - ABIE41_RS23655 0.67 +0.7 4,876,141 + ABIE41_RS23655 0.89 -0.1 4,876,319 + -2.9 4,876,319 + +1.0 4,876,319 + -0.5 4,876,320 - -0.6 4,876,320 - +0.8 4,876,482 + ABIE41_RS23660 0.13 +0.4 4,876,482 + ABIE41_RS23660 0.13 +0.8 4,876,675 + ABIE41_RS23660 0.30 +0.8 4,876,676 - ABIE41_RS23660 0.30 +1.0 4,876,676 - ABIE41_RS23660 0.30 +0.5 4,876,735 + ABIE41_RS23660 0.35 -0.1 4,876,735 + ABIE41_RS23660 0.35 -0.3 4,876,735 + ABIE41_RS23660 0.35 +0.2 4,876,736 - ABIE41_RS23660 0.35 -0.3 4,876,736 - ABIE41_RS23660 0.35 -1.1 4,876,736 - ABIE41_RS23660 0.35 -1.7 4,876,792 + ABIE41_RS23660 0.40 +0.4 4,876,792 + ABIE41_RS23660 0.40 -0.1 4,876,969 + ABIE41_RS23660 0.55 -0.0 4,876,969 + ABIE41_RS23660 0.55 +0.1 4,876,970 - ABIE41_RS23660 0.55 -0.6 4,877,180 - ABIE41_RS23660 0.74 +0.1 4,877,180 - ABIE41_RS23660 0.74 +0.2 4,877,180 - ABIE41_RS23660 0.74 +2.4 4,877,180 - ABIE41_RS23660 0.74 +0.4 4,877,302 + ABIE41_RS23660 0.84 -0.1 4,877,302 + ABIE41_RS23660 0.84 +0.3 4,877,303 - ABIE41_RS23660 0.84 +0.4 4,877,303 - ABIE41_RS23660 0.84 +0.8
Or see this region's nucleotide sequence