Strain Fitness in Bosea sp. OAE506 around ABIE41_RS21500

Experiment: Ying_AminoAcid20 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS21490 and ABIE41_RS21495 overlap by 1 nucleotidesABIE41_RS21495 and ABIE41_RS21500 overlap by 4 nucleotidesABIE41_RS21500 and ABIE41_RS21505 are separated by 13 nucleotidesABIE41_RS21505 and ABIE41_RS21510 are separated by 11 nucleotides ABIE41_RS21490: ABIE41_RS21490 - glycoside hydrolase/phage tail family protein, at 4,418,489 to 4,421,890 _RS21490 ABIE41_RS21495: ABIE41_RS21495 - NlpC/P60 family protein, at 4,421,890 to 4,422,333 _RS21495 ABIE41_RS21500: ABIE41_RS21500 - DUF2163 domain-containing protein, at 4,422,330 to 4,423,211 _RS21500 ABIE41_RS21505: ABIE41_RS21505 - DUF2460 domain-containing protein, at 4,423,225 to 4,423,864 _RS21505 ABIE41_RS21510: ABIE41_RS21510 - phage tail tape measure protein, at 4,423,876 to 4,424,472 _RS21510 Position (kb) 4422 4423 4424Strain fitness (log2 ratio) -2 -1 0 1 2at 4421.343 kb on + strand, within ABIE41_RS21490at 4421.343 kb on + strand, within ABIE41_RS21490at 4421.344 kb on - strand, within ABIE41_RS21490at 4421.533 kb on - strand, within ABIE41_RS21490at 4421.535 kb on + strand, within ABIE41_RS21490at 4421.535 kb on + strand, within ABIE41_RS21490at 4421.535 kb on + strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.541 kb on + strand, within ABIE41_RS21490at 4421.541 kb on + strand, within ABIE41_RS21490at 4421.541 kb on + strand, within ABIE41_RS21490at 4421.542 kb on - strand, within ABIE41_RS21490at 4421.542 kb on - strand, within ABIE41_RS21490at 4421.542 kb on - strand, within ABIE41_RS21490at 4421.542 kb on - strand, within ABIE41_RS21490at 4421.542 kb on - strand, within ABIE41_RS21490at 4421.542 kb on - strand, within ABIE41_RS21490at 4421.670 kb on + strandat 4422.269 kb on + strand, within ABIE41_RS21495at 4422.270 kb on - strand, within ABIE41_RS21495at 4422.270 kb on - strand, within ABIE41_RS21495at 4422.270 kb on - strand, within ABIE41_RS21495at 4422.407 kb on + strandat 4422.772 kb on + strand, within ABIE41_RS21500at 4422.772 kb on + strand, within ABIE41_RS21500at 4422.772 kb on + strand, within ABIE41_RS21500at 4422.773 kb on - strand, within ABIE41_RS21500at 4422.773 kb on - strand, within ABIE41_RS21500at 4422.773 kb on - strand, within ABIE41_RS21500at 4422.937 kb on + strand, within ABIE41_RS21500at 4422.937 kb on + strand, within ABIE41_RS21500at 4422.937 kb on + strand, within ABIE41_RS21500at 4422.937 kb on + strand, within ABIE41_RS21500at 4422.937 kb on + strand, within ABIE41_RS21500at 4423.493 kb on + strand, within ABIE41_RS21505at 4423.493 kb on + strand, within ABIE41_RS21505at 4423.493 kb on + strand, within ABIE41_RS21505at 4423.493 kb on + strand, within ABIE41_RS21505at 4423.493 kb on + strand, within ABIE41_RS21505at 4423.494 kb on - strand, within ABIE41_RS21505at 4423.723 kb on - strand, within ABIE41_RS21505at 4423.723 kb on - strand, within ABIE41_RS21505at 4424.112 kb on - strand, within ABIE41_RS21510

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1
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4,421,343 + ABIE41_RS21490 0.84 +0.9
4,421,343 + ABIE41_RS21490 0.84 -0.3
4,421,344 - ABIE41_RS21490 0.84 -0.8
4,421,533 - ABIE41_RS21490 0.89 -1.0
4,421,535 + ABIE41_RS21490 0.90 +0.1
4,421,535 + ABIE41_RS21490 0.90 +0.5
4,421,535 + ABIE41_RS21490 0.90 -0.3
4,421,536 - ABIE41_RS21490 0.90 -0.1
4,421,536 - ABIE41_RS21490 0.90 -1.0
4,421,536 - ABIE41_RS21490 0.90 -0.3
4,421,536 - ABIE41_RS21490 0.90 -0.5
4,421,536 - ABIE41_RS21490 0.90 -0.3
4,421,536 - ABIE41_RS21490 0.90 +0.4
4,421,536 - ABIE41_RS21490 0.90 +0.0
4,421,536 - ABIE41_RS21490 0.90 +0.6
4,421,536 - ABIE41_RS21490 0.90 -1.4
4,421,536 - ABIE41_RS21490 0.90 +0.1
4,421,541 + ABIE41_RS21490 0.90 +0.9
4,421,541 + ABIE41_RS21490 0.90 +0.2
4,421,541 + ABIE41_RS21490 0.90 +0.2
4,421,542 - ABIE41_RS21490 0.90 -0.4
4,421,542 - ABIE41_RS21490 0.90 +0.2
4,421,542 - ABIE41_RS21490 0.90 +0.3
4,421,542 - ABIE41_RS21490 0.90 +0.1
4,421,542 - ABIE41_RS21490 0.90 +0.3
4,421,542 - ABIE41_RS21490 0.90 +0.5
4,421,670 + -0.0
4,422,269 + ABIE41_RS21495 0.85 +0.7
4,422,270 - ABIE41_RS21495 0.86 +0.2
4,422,270 - ABIE41_RS21495 0.86 -0.2
4,422,270 - ABIE41_RS21495 0.86 +0.4
4,422,407 + -0.0
4,422,772 + ABIE41_RS21500 0.50 -1.2
4,422,772 + ABIE41_RS21500 0.50 +0.2
4,422,772 + ABIE41_RS21500 0.50 -1.4
4,422,773 - ABIE41_RS21500 0.50 -1.0
4,422,773 - ABIE41_RS21500 0.50 -0.2
4,422,773 - ABIE41_RS21500 0.50 +1.0
4,422,937 + ABIE41_RS21500 0.69 +0.4
4,422,937 + ABIE41_RS21500 0.69 +1.8
4,422,937 + ABIE41_RS21500 0.69 -0.4
4,422,937 + ABIE41_RS21500 0.69 -0.1
4,422,937 + ABIE41_RS21500 0.69 -0.5
4,423,493 + ABIE41_RS21505 0.42 -0.0
4,423,493 + ABIE41_RS21505 0.42 -1.9
4,423,493 + ABIE41_RS21505 0.42 +0.1
4,423,493 + ABIE41_RS21505 0.42 +0.5
4,423,493 + ABIE41_RS21505 0.42 -0.7
4,423,494 - ABIE41_RS21505 0.42 +2.1
4,423,723 - ABIE41_RS21505 0.78 -0.1
4,423,723 - ABIE41_RS21505 0.78 +0.5
4,424,112 - ABIE41_RS21510 0.40 +0.4

Or see this region's nucleotide sequence