Experiment: Ying_AminoAcid20 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21490 and ABIE41_RS21495 overlap by 1 nucleotides ABIE41_RS21495 and ABIE41_RS21500 overlap by 4 nucleotides ABIE41_RS21500 and ABIE41_RS21505 are separated by 13 nucleotides
ABIE41_RS21490: ABIE41_RS21490 - glycoside hydrolase/phage tail family protein, at 4,418,489 to 4,421,890
_RS21490
ABIE41_RS21495: ABIE41_RS21495 - NlpC/P60 family protein, at 4,421,890 to 4,422,333
_RS21495
ABIE41_RS21500: ABIE41_RS21500 - DUF2163 domain-containing protein, at 4,422,330 to 4,423,211
_RS21500
ABIE41_RS21505: ABIE41_RS21505 - DUF2460 domain-containing protein, at 4,423,225 to 4,423,864
_RS21505
Position (kb) 4421
4422
4423 Strain fitness (log2 ratio) -1
0
1
2 at 4420.977 kb on - strand, within ABIE41_RS21490 at 4421.017 kb on + strand, within ABIE41_RS21490 at 4421.017 kb on + strand, within ABIE41_RS21490 at 4421.017 kb on + strand, within ABIE41_RS21490 at 4421.018 kb on - strand, within ABIE41_RS21490 at 4421.134 kb on - strand, within ABIE41_RS21490 at 4421.202 kb on + strand, within ABIE41_RS21490 at 4421.343 kb on + strand, within ABIE41_RS21490 at 4421.343 kb on + strand, within ABIE41_RS21490 at 4421.344 kb on - strand, within ABIE41_RS21490 at 4421.533 kb on - strand, within ABIE41_RS21490 at 4421.535 kb on + strand, within ABIE41_RS21490 at 4421.535 kb on + strand, within ABIE41_RS21490 at 4421.535 kb on + strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.541 kb on + strand, within ABIE41_RS21490 at 4421.541 kb on + strand, within ABIE41_RS21490 at 4421.541 kb on + strand, within ABIE41_RS21490 at 4421.542 kb on - strand, within ABIE41_RS21490 at 4421.542 kb on - strand, within ABIE41_RS21490 at 4421.542 kb on - strand, within ABIE41_RS21490 at 4421.542 kb on - strand, within ABIE41_RS21490 at 4421.542 kb on - strand, within ABIE41_RS21490 at 4421.542 kb on - strand, within ABIE41_RS21490 at 4421.670 kb on + strand at 4422.269 kb on + strand, within ABIE41_RS21495 at 4422.270 kb on - strand, within ABIE41_RS21495 at 4422.270 kb on - strand, within ABIE41_RS21495 at 4422.270 kb on - strand, within ABIE41_RS21495 at 4422.407 kb on + strand at 4422.772 kb on + strand, within ABIE41_RS21500 at 4422.772 kb on + strand, within ABIE41_RS21500 at 4422.772 kb on + strand, within ABIE41_RS21500 at 4422.773 kb on - strand, within ABIE41_RS21500 at 4422.773 kb on - strand, within ABIE41_RS21500 at 4422.773 kb on - strand, within ABIE41_RS21500 at 4422.937 kb on + strand, within ABIE41_RS21500 at 4422.937 kb on + strand, within ABIE41_RS21500 at 4422.937 kb on + strand, within ABIE41_RS21500 at 4422.937 kb on + strand, within ABIE41_RS21500 at 4422.937 kb on + strand, within ABIE41_RS21500
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1 remove 4,420,977 - ABIE41_RS21490 0.73 -1.6 4,421,017 + ABIE41_RS21490 0.74 +0.1 4,421,017 + ABIE41_RS21490 0.74 -1.6 4,421,017 + ABIE41_RS21490 0.74 -0.6 4,421,018 - ABIE41_RS21490 0.74 +0.5 4,421,134 - ABIE41_RS21490 0.78 -1.6 4,421,202 + ABIE41_RS21490 0.80 -0.0 4,421,343 + ABIE41_RS21490 0.84 +0.9 4,421,343 + ABIE41_RS21490 0.84 -0.3 4,421,344 - ABIE41_RS21490 0.84 -0.8 4,421,533 - ABIE41_RS21490 0.89 -1.0 4,421,535 + ABIE41_RS21490 0.90 +0.1 4,421,535 + ABIE41_RS21490 0.90 +0.5 4,421,535 + ABIE41_RS21490 0.90 -0.3 4,421,536 - ABIE41_RS21490 0.90 -0.1 4,421,536 - ABIE41_RS21490 0.90 -1.0 4,421,536 - ABIE41_RS21490 0.90 -0.3 4,421,536 - ABIE41_RS21490 0.90 -0.5 4,421,536 - ABIE41_RS21490 0.90 -0.3 4,421,536 - ABIE41_RS21490 0.90 +0.4 4,421,536 - ABIE41_RS21490 0.90 +0.0 4,421,536 - ABIE41_RS21490 0.90 +0.6 4,421,536 - ABIE41_RS21490 0.90 -1.4 4,421,536 - ABIE41_RS21490 0.90 +0.1 4,421,541 + ABIE41_RS21490 0.90 +0.9 4,421,541 + ABIE41_RS21490 0.90 +0.2 4,421,541 + ABIE41_RS21490 0.90 +0.2 4,421,542 - ABIE41_RS21490 0.90 -0.4 4,421,542 - ABIE41_RS21490 0.90 +0.2 4,421,542 - ABIE41_RS21490 0.90 +0.3 4,421,542 - ABIE41_RS21490 0.90 +0.1 4,421,542 - ABIE41_RS21490 0.90 +0.3 4,421,542 - ABIE41_RS21490 0.90 +0.5 4,421,670 + -0.0 4,422,269 + ABIE41_RS21495 0.85 +0.7 4,422,270 - ABIE41_RS21495 0.86 +0.2 4,422,270 - ABIE41_RS21495 0.86 -0.2 4,422,270 - ABIE41_RS21495 0.86 +0.4 4,422,407 + -0.0 4,422,772 + ABIE41_RS21500 0.50 -1.2 4,422,772 + ABIE41_RS21500 0.50 +0.2 4,422,772 + ABIE41_RS21500 0.50 -1.4 4,422,773 - ABIE41_RS21500 0.50 -1.0 4,422,773 - ABIE41_RS21500 0.50 -0.2 4,422,773 - ABIE41_RS21500 0.50 +1.0 4,422,937 + ABIE41_RS21500 0.69 +0.4 4,422,937 + ABIE41_RS21500 0.69 +1.8 4,422,937 + ABIE41_RS21500 0.69 -0.4 4,422,937 + ABIE41_RS21500 0.69 -0.1 4,422,937 + ABIE41_RS21500 0.69 -0.5
Or see this region's nucleotide sequence