Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17745

Experiment: Ying_AminoAcid20 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17740 and ABIE41_RS17745 are separated by 123 nucleotidesABIE41_RS17745 and ABIE41_RS17750 are separated by 194 nucleotides ABIE41_RS17740: ABIE41_RS17740 - YicC/YloC family endoribonuclease, at 3,654,760 to 3,655,641 _RS17740 ABIE41_RS17745: ABIE41_RS17745 - endolytic transglycosylase MltG, at 3,655,765 to 3,657,141 _RS17745 ABIE41_RS17750: ABIE41_RS17750 - beta-ketoacyl-ACP synthase II, at 3,657,336 to 3,658,607 _RS17750 Position (kb) 3655 3656 3657 3658Strain fitness (log2 ratio) -2 -1 0 1at 3654.962 kb on - strand, within ABIE41_RS17740at 3654.962 kb on - strand, within ABIE41_RS17740at 3654.962 kb on - strand, within ABIE41_RS17740at 3655.326 kb on - strand, within ABIE41_RS17740at 3655.680 kb on - strandat 3656.095 kb on - strand, within ABIE41_RS17745at 3656.156 kb on + strand, within ABIE41_RS17745at 3656.156 kb on + strand, within ABIE41_RS17745at 3656.249 kb on + strand, within ABIE41_RS17745at 3656.249 kb on + strand, within ABIE41_RS17745at 3656.249 kb on + strand, within ABIE41_RS17745at 3656.249 kb on + strand, within ABIE41_RS17745at 3656.259 kb on - strand, within ABIE41_RS17745at 3656.587 kb on - strand, within ABIE41_RS17745at 3656.733 kb on + strand, within ABIE41_RS17745at 3657.019 kb on + strandat 3657.019 kb on + strandat 3657.019 kb on + strandat 3657.020 kb on - strandat 3657.020 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1
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3,654,962 - ABIE41_RS17740 0.23 -0.4
3,654,962 - ABIE41_RS17740 0.23 -0.6
3,654,962 - ABIE41_RS17740 0.23 -1.5
3,655,326 - ABIE41_RS17740 0.64 -2.0
3,655,680 - +1.4
3,656,095 - ABIE41_RS17745 0.24 -2.3
3,656,156 + ABIE41_RS17745 0.28 +0.0
3,656,156 + ABIE41_RS17745 0.28 -2.2
3,656,249 + ABIE41_RS17745 0.35 -2.1
3,656,249 + ABIE41_RS17745 0.35 -2.1
3,656,249 + ABIE41_RS17745 0.35 -1.4
3,656,249 + ABIE41_RS17745 0.35 -1.8
3,656,259 - ABIE41_RS17745 0.36 -2.0
3,656,587 - ABIE41_RS17745 0.60 -2.1
3,656,733 + ABIE41_RS17745 0.70 -0.8
3,657,019 + -0.3
3,657,019 + -2.2
3,657,019 + -1.0
3,657,020 - -0.6
3,657,020 - -0.5

Or see this region's nucleotide sequence