Strain Fitness in Bosea sp. OAE506 around ABIE41_RS10320

Experiment: Ying_AminoAcid20 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 1
2,124,424	-				+1.2
2,124,570	+		ABIE41_RS10315	0.16	-0.2
2,124,571	-		ABIE41_RS10315	0.16	+1.8
2,124,604	-		ABIE41_RS10315	0.21	-0.4
2,124,645	+		ABIE41_RS10315	0.26	+0.6
2,124,646	-		ABIE41_RS10315	0.27	+1.2
2,124,671	-		ABIE41_RS10315	0.30	+1.5
2,124,690	+		ABIE41_RS10315	0.33	-0.0
2,124,690	+		ABIE41_RS10315	0.33	+0.2
2,124,691	-		ABIE41_RS10315	0.33	-1.8
2,124,700	-		ABIE41_RS10315	0.34	-0.4
2,124,780	+		ABIE41_RS10315	0.46	-0.2
2,124,781	-		ABIE41_RS10315	0.46	+0.1
2,124,966	+		ABIE41_RS10315	0.73	+0.6
2,124,967	-		ABIE41_RS10315	0.73	+1.6
2,124,967	-		ABIE41_RS10315	0.73	+1.7
2,125,057	-		ABIE41_RS10315	0.86	+0.2
2,125,218	+				+0.5
2,125,218	+				-0.1
2,125,218	+				-0.3
2,125,218	+				+0.3
2,125,219	-				+1.6
2,125,219	-				-2.3
2,125,319	+				+1.1
2,125,319	+				-0.2
2,125,320	-				-0.8
2,125,320	-				-1.3
2,125,320	-				+0.2
2,125,462	+				-0.8
2,125,462	+				-1.3
2,125,463	-				-1.1
2,125,463	-				+1.6
2,125,670	-		ABIE41_RS10320	0.14	-0.4
2,125,685	-		ABIE41_RS10320	0.14	+2.1
2,125,814	-		ABIE41_RS10320	0.20	-0.2
2,126,098	+		ABIE41_RS10320	0.32	+0.2
2,126,099	-		ABIE41_RS10320	0.32	+0.4
2,126,099	-		ABIE41_RS10320	0.32	+0.8
2,126,136	+		ABIE41_RS10320	0.34	-2.6
2,126,191	+		ABIE41_RS10320	0.36	-1.8
2,126,192	-		ABIE41_RS10320	0.36	-1.8
2,126,230	+		ABIE41_RS10320	0.38	-0.0
2,126,231	-		ABIE41_RS10320	0.38	+0.3
2,126,341	+		ABIE41_RS10320	0.43	-1.3
2,126,342	-		ABIE41_RS10320	0.43	-0.7
2,126,659	+		ABIE41_RS10320	0.56	+0.7
2,126,660	-		ABIE41_RS10320	0.56	+1.3
2,127,163	+		ABIE41_RS10320	0.78	-0.4
2,127,163	+		ABIE41_RS10320	0.78	-1.7
2,127,163	+		ABIE41_RS10320	0.78	+0.2
2,127,164	-		ABIE41_RS10320	0.78	-0.2
2,127,164	-		ABIE41_RS10320	0.78	-0.7
2,127,250	+		ABIE41_RS10320	0.82	+1.2
2,127,251	-		ABIE41_RS10320	0.82	+0.1
2,127,251	-		ABIE41_RS10320	0.82	+0.3
2,127,251	-		ABIE41_RS10320	0.82	-0.7
2,127,251	-		ABIE41_RS10320	0.82	+0.2
2,127,251	-		ABIE41_RS10320	0.82	+0.1
2,127,370	+		ABIE41_RS10320	0.87	-0.5
2,127,370	+		ABIE41_RS10320	0.87	+0.5
2,127,370	+		ABIE41_RS10320	0.87	-0.3
2,127,370	+		ABIE41_RS10320	0.87	-0.3
2,127,370	+		ABIE41_RS10320	0.87	+0.5
2,127,371	-		ABIE41_RS10320	0.87	-2.7
2,127,371	-		ABIE41_RS10320	0.87	+1.6
2,127,371	-		ABIE41_RS10320	0.87	+0.4
2,127,371	-		ABIE41_RS10320	0.87	-1.4
2,127,371	-		ABIE41_RS10320	0.87	+0.1
2,127,392	-		ABIE41_RS10320	0.88	-0.8
2,127,511	+				-1.3
2,127,512	-				+0.2
2,127,512	-				+1.4
2,127,601	+				-1.4
2,127,602	-				+0.3
2,127,625	+				-0.2
2,127,625	+				+1.7
2,127,625	+				-1.8
2,127,625	+				-0.6
2,127,625	+				+0.7
2,127,625	+				-0.1
2,127,625	+				+0.4
2,127,626	-				-0.2
2,127,626	-				+0.6
2,127,626	-				+0.4
2,127,626	-				+1.2
2,127,626	-				+0.3
2,127,626	-				-0.3
2,127,626	-				-0.2
2,127,626	-				-1.2
2,127,626	-				+0.7
2,127,626	-				+2.5
2,127,626	-				+0.9
2,128,047	+		ABIE41_RS10325	0.70	-0.1
2,128,047	+		ABIE41_RS10325	0.70	-1.1
2,128,047	+		ABIE41_RS10325	0.70	-4.6
2,128,047	+		ABIE41_RS10325	0.70	-0.0
2,128,047	+		ABIE41_RS10325	0.70	-2.3
2,128,048	-		ABIE41_RS10325	0.70	+0.6
2,128,225	+				+1.3
2,128,225	+				-0.4
2,128,225	+				+0.3
2,128,226	-				-2.1
2,128,396	+		ABIE41_RS10330	0.21	-1.0
2,128,396	+		ABIE41_RS10330	0.21	+0.3
2,128,396	+		ABIE41_RS10330	0.21	+1.1
2,128,396	+		ABIE41_RS10330	0.21	+0.7
2,128,396	+		ABIE41_RS10330	0.21	+1.0
2,128,396	+		ABIE41_RS10330	0.21	-0.6
2,128,397	-		ABIE41_RS10330	0.22	-0.0
2,128,397	-		ABIE41_RS10330	0.22	-1.9
2,128,397	-		ABIE41_RS10330	0.22	-0.1
2,128,397	-		ABIE41_RS10330	0.22	+2.1
2,128,397	-		ABIE41_RS10330	0.22	-0.1
2,128,397	-		ABIE41_RS10330	0.22	-0.3
2,128,397	-		ABIE41_RS10330	0.22	-0.4
2,128,570	+		ABIE41_RS10330	0.36	-0.1
2,128,570	+		ABIE41_RS10330	0.36	+0.2
2,128,570	+		ABIE41_RS10330	0.36	+0.1
2,128,570	+		ABIE41_RS10330	0.36	-0.9
2,128,570	+		ABIE41_RS10330	0.36	-0.5
2,128,570	+		ABIE41_RS10330	0.36	-0.0
2,128,571	-		ABIE41_RS10330	0.36	-1.2
2,128,571	-		ABIE41_RS10330	0.36	-1.0
2,128,571	-		ABIE41_RS10330	0.36	-0.1