Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07310

Experiment: Ying_AminoAcid20 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07305 and ABIE41_RS07310 overlap by 4 nucleotidesABIE41_RS07310 and ABIE41_RS07315 overlap by 4 nucleotidesABIE41_RS07315 and ABIE41_RS07320 are separated by 36 nucleotides ABIE41_RS07305: ABIE41_RS07305 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 1,507,460 to 1,508,299 _RS07305 ABIE41_RS07310: ABIE41_RS07310 - hypothetical protein, at 1,508,296 to 1,508,622 _RS07310 ABIE41_RS07315: ABIE41_RS07315 - GNAT family protein, at 1,508,619 to 1,509,317 _RS07315 ABIE41_RS07320: ABIE41_RS07320 - SDR family oxidoreductase, at 1,509,354 to 1,510,100 _RS07320 Position (kb) 1508 1509Strain fitness (log2 ratio) -2 -1 0 1at 1507.662 kb on + strand, within ABIE41_RS07305at 1507.663 kb on - strand, within ABIE41_RS07305at 1507.721 kb on + strand, within ABIE41_RS07305at 1507.721 kb on + strand, within ABIE41_RS07305at 1507.721 kb on + strand, within ABIE41_RS07305at 1507.722 kb on - strand, within ABIE41_RS07305at 1508.006 kb on + strand, within ABIE41_RS07305at 1508.006 kb on + strand, within ABIE41_RS07305at 1508.006 kb on + strand, within ABIE41_RS07305at 1508.006 kb on + strand, within ABIE41_RS07305at 1508.006 kb on + strand, within ABIE41_RS07305at 1508.007 kb on - strand, within ABIE41_RS07305at 1508.007 kb on - strand, within ABIE41_RS07305at 1508.007 kb on - strand, within ABIE41_RS07305at 1508.007 kb on - strand, within ABIE41_RS07305at 1508.398 kb on - strand, within ABIE41_RS07310at 1508.458 kb on + strand, within ABIE41_RS07310at 1508.458 kb on + strand, within ABIE41_RS07310at 1508.458 kb on + strand, within ABIE41_RS07310at 1508.458 kb on + strand, within ABIE41_RS07310at 1508.458 kb on + strand, within ABIE41_RS07310at 1508.459 kb on - strand, within ABIE41_RS07310at 1508.459 kb on - strand, within ABIE41_RS07310at 1508.459 kb on - strand, within ABIE41_RS07310at 1508.459 kb on - strand, within ABIE41_RS07310at 1508.459 kb on - strand, within ABIE41_RS07310at 1508.459 kb on - strand, within ABIE41_RS07310at 1508.459 kb on - strand, within ABIE41_RS07310at 1508.459 kb on - strand, within ABIE41_RS07310at 1508.709 kb on + strand, within ABIE41_RS07315at 1508.709 kb on + strand, within ABIE41_RS07315at 1508.829 kb on + strand, within ABIE41_RS07315at 1508.967 kb on + strand, within ABIE41_RS07315at 1508.967 kb on + strand, within ABIE41_RS07315at 1508.967 kb on + strand, within ABIE41_RS07315at 1508.967 kb on + strand, within ABIE41_RS07315at 1508.968 kb on - strand, within ABIE41_RS07315at 1508.968 kb on - strand, within ABIE41_RS07315at 1508.968 kb on - strand, within ABIE41_RS07315at 1508.968 kb on - strand, within ABIE41_RS07315at 1508.968 kb on - strand, within ABIE41_RS07315at 1508.968 kb on - strand, within ABIE41_RS07315at 1508.976 kb on + strand, within ABIE41_RS07315at 1508.977 kb on - strand, within ABIE41_RS07315at 1508.977 kb on - strand, within ABIE41_RS07315at 1509.130 kb on - strand, within ABIE41_RS07315at 1509.130 kb on - strand, within ABIE41_RS07315at 1509.130 kb on - strand, within ABIE41_RS07315at 1509.130 kb on - strand, within ABIE41_RS07315at 1509.322 kb on - strandat 1509.597 kb on + strand, within ABIE41_RS07320at 1509.598 kb on - strand, within ABIE41_RS07320

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1
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1,507,662 + ABIE41_RS07305 0.24 -2.5
1,507,663 - ABIE41_RS07305 0.24 +1.3
1,507,721 + ABIE41_RS07305 0.31 +0.4
1,507,721 + ABIE41_RS07305 0.31 -1.9
1,507,721 + ABIE41_RS07305 0.31 -1.0
1,507,722 - ABIE41_RS07305 0.31 +1.1
1,508,006 + ABIE41_RS07305 0.65 +0.6
1,508,006 + ABIE41_RS07305 0.65 -0.7
1,508,006 + ABIE41_RS07305 0.65 -0.2
1,508,006 + ABIE41_RS07305 0.65 -0.0
1,508,006 + ABIE41_RS07305 0.65 +0.5
1,508,007 - ABIE41_RS07305 0.65 -0.8
1,508,007 - ABIE41_RS07305 0.65 +0.3
1,508,007 - ABIE41_RS07305 0.65 -0.2
1,508,007 - ABIE41_RS07305 0.65 -0.2
1,508,398 - ABIE41_RS07310 0.31 +0.3
1,508,458 + ABIE41_RS07310 0.50 +0.4
1,508,458 + ABIE41_RS07310 0.50 -0.4
1,508,458 + ABIE41_RS07310 0.50 -0.4
1,508,458 + ABIE41_RS07310 0.50 -0.9
1,508,458 + ABIE41_RS07310 0.50 +0.4
1,508,459 - ABIE41_RS07310 0.50 +1.4
1,508,459 - ABIE41_RS07310 0.50 -0.5
1,508,459 - ABIE41_RS07310 0.50 -0.9
1,508,459 - ABIE41_RS07310 0.50 -0.5
1,508,459 - ABIE41_RS07310 0.50 -0.7
1,508,459 - ABIE41_RS07310 0.50 -1.2
1,508,459 - ABIE41_RS07310 0.50 +0.8
1,508,459 - ABIE41_RS07310 0.50 -0.7
1,508,709 + ABIE41_RS07315 0.13 -0.1
1,508,709 + ABIE41_RS07315 0.13 -0.8
1,508,829 + ABIE41_RS07315 0.30 -0.1
1,508,967 + ABIE41_RS07315 0.50 -0.4
1,508,967 + ABIE41_RS07315 0.50 -2.1
1,508,967 + ABIE41_RS07315 0.50 -0.1
1,508,967 + ABIE41_RS07315 0.50 -1.0
1,508,968 - ABIE41_RS07315 0.50 -0.1
1,508,968 - ABIE41_RS07315 0.50 +0.1
1,508,968 - ABIE41_RS07315 0.50 -0.6
1,508,968 - ABIE41_RS07315 0.50 -0.6
1,508,968 - ABIE41_RS07315 0.50 +0.2
1,508,968 - ABIE41_RS07315 0.50 +0.5
1,508,976 + ABIE41_RS07315 0.51 +0.7
1,508,977 - ABIE41_RS07315 0.51 -0.2
1,508,977 - ABIE41_RS07315 0.51 +0.1
1,509,130 - ABIE41_RS07315 0.73 -1.8
1,509,130 - ABIE41_RS07315 0.73 -0.2
1,509,130 - ABIE41_RS07315 0.73 +0.6
1,509,130 - ABIE41_RS07315 0.73 -0.9
1,509,322 - +0.6
1,509,597 + ABIE41_RS07320 0.33 -0.1
1,509,598 - ABIE41_RS07320 0.33 +0.7

Or see this region's nucleotide sequence