Experiment: Ying_AminoAcid20 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04595 and ABIE41_RS04600 are separated by 197 nucleotides ABIE41_RS04600 and ABIE41_RS04605 are separated by 123 nucleotides
ABIE41_RS04595: ABIE41_RS04595 - polyribonucleotide nucleotidyltransferase, at 957,985 to 960,153
_RS04595
ABIE41_RS04600: ABIE41_RS04600 - pyridoxamine 5'-phosphate oxidase family protein, at 960,351 to 960,986
_RS04600
ABIE41_RS04605: ABIE41_RS04605 - adenosine kinase, at 961,110 to 962,108
_RS04605
Position (kb) 960
961 Strain fitness (log2 ratio) -2
-1
0
1
2 at 960.273 kb on - strand at 960.273 kb on - strand at 960.456 kb on + strand, within ABIE41_RS04600 at 960.456 kb on + strand, within ABIE41_RS04600 at 960.457 kb on - strand, within ABIE41_RS04600 at 960.457 kb on - strand, within ABIE41_RS04600 at 960.457 kb on - strand, within ABIE41_RS04600 at 960.457 kb on - strand, within ABIE41_RS04600 at 960.457 kb on - strand, within ABIE41_RS04600 at 960.457 kb on - strand, within ABIE41_RS04600 at 960.457 kb on - strand, within ABIE41_RS04600 at 960.457 kb on - strand, within ABIE41_RS04600 at 960.795 kb on + strand, within ABIE41_RS04600 at 960.795 kb on + strand, within ABIE41_RS04600 at 960.795 kb on + strand, within ABIE41_RS04600 at 960.795 kb on + strand, within ABIE41_RS04600 at 960.796 kb on - strand, within ABIE41_RS04600 at 960.942 kb on + strand at 960.981 kb on + strand at 960.981 kb on + strand at 960.981 kb on + strand at 960.982 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1 remove 960,273 - -2.4 960,273 - +0.9 960,456 + ABIE41_RS04600 0.17 -0.0 960,456 + ABIE41_RS04600 0.17 -0.4 960,457 - ABIE41_RS04600 0.17 +2.1 960,457 - ABIE41_RS04600 0.17 -2.0 960,457 - ABIE41_RS04600 0.17 +0.5 960,457 - ABIE41_RS04600 0.17 +0.2 960,457 - ABIE41_RS04600 0.17 -1.6 960,457 - ABIE41_RS04600 0.17 +0.4 960,457 - ABIE41_RS04600 0.17 +0.5 960,457 - ABIE41_RS04600 0.17 -1.6 960,795 + ABIE41_RS04600 0.70 +0.9 960,795 + ABIE41_RS04600 0.70 -0.5 960,795 + ABIE41_RS04600 0.70 +0.1 960,795 + ABIE41_RS04600 0.70 +0.4 960,796 - ABIE41_RS04600 0.70 -0.6 960,942 + +0.3 960,981 + +0.0 960,981 + +0.1 960,981 + +0.1 960,982 - +1.7
Or see this region's nucleotide sequence