Experiment: Ying_AminoAcid20 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS02290 and ABIE41_RS02295 are separated by 91 nucleotides ABIE41_RS02295 and ABIE41_RS02300 are separated by 437 nucleotides
ABIE41_RS02290: ABIE41_RS02290 - ABC transporter permease, at 457,051 to 458,007
_RS02290
ABIE41_RS02295: ABIE41_RS02295 - ABC transporter substrate-binding protein, at 458,099 to 459,661
_RS02295
ABIE41_RS02300: ABIE41_RS02300 - isochorismatase family cysteine hydrolase, at 460,099 to 460,806
_RS02300
Position (kb) 458
459
460 Strain fitness (log2 ratio) -2
-1
0
1
2 at 457.574 kb on + strand, within ABIE41_RS02290 at 457.575 kb on - strand, within ABIE41_RS02290 at 457.640 kb on + strand, within ABIE41_RS02290 at 457.643 kb on + strand, within ABIE41_RS02290 at 457.643 kb on + strand, within ABIE41_RS02290 at 457.644 kb on - strand, within ABIE41_RS02290 at 457.644 kb on - strand, within ABIE41_RS02290 at 457.644 kb on - strand, within ABIE41_RS02290 at 457.844 kb on + strand, within ABIE41_RS02290 at 457.844 kb on + strand, within ABIE41_RS02290 at 457.844 kb on + strand, within ABIE41_RS02290 at 457.845 kb on - strand, within ABIE41_RS02290 at 457.845 kb on - strand, within ABIE41_RS02290 at 457.845 kb on - strand, within ABIE41_RS02290 at 457.997 kb on + strand at 457.997 kb on + strand at 457.997 kb on + strand at 457.997 kb on + strand at 457.997 kb on + strand at 457.998 kb on - strand at 458.292 kb on + strand, within ABIE41_RS02295 at 458.293 kb on - strand, within ABIE41_RS02295 at 458.293 kb on - strand, within ABIE41_RS02295 at 458.293 kb on - strand, within ABIE41_RS02295 at 458.332 kb on - strand, within ABIE41_RS02295 at 458.332 kb on - strand, within ABIE41_RS02295 at 458.437 kb on - strand, within ABIE41_RS02295 at 458.437 kb on - strand, within ABIE41_RS02295 at 458.667 kb on + strand, within ABIE41_RS02295 at 458.667 kb on + strand, within ABIE41_RS02295 at 458.667 kb on + strand, within ABIE41_RS02295 at 458.668 kb on - strand, within ABIE41_RS02295 at 458.668 kb on - strand, within ABIE41_RS02295 at 458.668 kb on - strand, within ABIE41_RS02295 at 458.688 kb on + strand, within ABIE41_RS02295 at 458.716 kb on - strand, within ABIE41_RS02295 at 458.772 kb on + strand, within ABIE41_RS02295 at 458.772 kb on + strand, within ABIE41_RS02295 at 458.772 kb on + strand, within ABIE41_RS02295 at 458.773 kb on - strand, within ABIE41_RS02295 at 458.773 kb on - strand, within ABIE41_RS02295 at 458.832 kb on + strand, within ABIE41_RS02295 at 458.833 kb on - strand, within ABIE41_RS02295 at 458.833 kb on - strand, within ABIE41_RS02295 at 458.833 kb on - strand, within ABIE41_RS02295 at 458.851 kb on - strand, within ABIE41_RS02295 at 459.024 kb on + strand, within ABIE41_RS02295 at 459.024 kb on + strand, within ABIE41_RS02295 at 459.025 kb on - strand, within ABIE41_RS02295 at 459.025 kb on - strand, within ABIE41_RS02295 at 459.082 kb on - strand, within ABIE41_RS02295 at 459.111 kb on + strand, within ABIE41_RS02295 at 459.112 kb on - strand, within ABIE41_RS02295 at 459.112 kb on - strand, within ABIE41_RS02295 at 459.112 kb on - strand, within ABIE41_RS02295 at 459.121 kb on - strand, within ABIE41_RS02295 at 459.121 kb on - strand, within ABIE41_RS02295 at 459.180 kb on + strand, within ABIE41_RS02295 at 459.180 kb on + strand, within ABIE41_RS02295 at 459.181 kb on - strand, within ABIE41_RS02295 at 459.181 kb on - strand, within ABIE41_RS02295 at 459.181 kb on - strand, within ABIE41_RS02295 at 459.507 kb on + strand at 459.717 kb on + strand at 459.768 kb on + strand at 460.259 kb on + strand, within ABIE41_RS02300 at 460.259 kb on + strand, within ABIE41_RS02300 at 460.259 kb on + strand, within ABIE41_RS02300 at 460.259 kb on + strand, within ABIE41_RS02300 at 460.259 kb on + strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.445 kb on + strand, within ABIE41_RS02300 at 460.445 kb on + strand, within ABIE41_RS02300 at 460.446 kb on - strand, within ABIE41_RS02300 at 460.574 kb on + strand, within ABIE41_RS02300 at 460.575 kb on - strand, within ABIE41_RS02300 at 460.575 kb on - strand, within ABIE41_RS02300 at 460.575 kb on - strand, within ABIE41_RS02300 at 460.575 kb on - strand, within ABIE41_RS02300 at 460.646 kb on + strand, within ABIE41_RS02300 at 460.647 kb on - strand, within ABIE41_RS02300
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1 remove 457,574 + ABIE41_RS02290 0.55 -0.3 457,575 - ABIE41_RS02290 0.55 +0.1 457,640 + ABIE41_RS02290 0.62 +0.2 457,643 + ABIE41_RS02290 0.62 -0.2 457,643 + ABIE41_RS02290 0.62 -1.5 457,644 - ABIE41_RS02290 0.62 -0.6 457,644 - ABIE41_RS02290 0.62 +0.1 457,644 - ABIE41_RS02290 0.62 +0.3 457,844 + ABIE41_RS02290 0.83 -0.4 457,844 + ABIE41_RS02290 0.83 +0.6 457,844 + ABIE41_RS02290 0.83 -0.1 457,845 - ABIE41_RS02290 0.83 -0.5 457,845 - ABIE41_RS02290 0.83 +1.0 457,845 - ABIE41_RS02290 0.83 +0.6 457,997 + -0.3 457,997 + -1.3 457,997 + +0.6 457,997 + +1.4 457,997 + -1.8 457,998 - -0.2 458,292 + ABIE41_RS02295 0.12 -0.4 458,293 - ABIE41_RS02295 0.12 -0.5 458,293 - ABIE41_RS02295 0.12 -1.4 458,293 - ABIE41_RS02295 0.12 -0.2 458,332 - ABIE41_RS02295 0.15 +0.1 458,332 - ABIE41_RS02295 0.15 +0.1 458,437 - ABIE41_RS02295 0.22 -2.6 458,437 - ABIE41_RS02295 0.22 +0.0 458,667 + ABIE41_RS02295 0.36 -2.1 458,667 + ABIE41_RS02295 0.36 +0.5 458,667 + ABIE41_RS02295 0.36 +0.9 458,668 - ABIE41_RS02295 0.36 +1.2 458,668 - ABIE41_RS02295 0.36 +0.6 458,668 - ABIE41_RS02295 0.36 -0.3 458,688 + ABIE41_RS02295 0.38 -0.5 458,716 - ABIE41_RS02295 0.39 +0.5 458,772 + ABIE41_RS02295 0.43 +2.2 458,772 + ABIE41_RS02295 0.43 +1.7 458,772 + ABIE41_RS02295 0.43 +2.2 458,773 - ABIE41_RS02295 0.43 +0.4 458,773 - ABIE41_RS02295 0.43 +0.4 458,832 + ABIE41_RS02295 0.47 +0.2 458,833 - ABIE41_RS02295 0.47 -0.0 458,833 - ABIE41_RS02295 0.47 +0.1 458,833 - ABIE41_RS02295 0.47 +1.8 458,851 - ABIE41_RS02295 0.48 -0.4 459,024 + ABIE41_RS02295 0.59 -0.0 459,024 + ABIE41_RS02295 0.59 -0.8 459,025 - ABIE41_RS02295 0.59 +0.2 459,025 - ABIE41_RS02295 0.59 +0.8 459,082 - ABIE41_RS02295 0.63 +0.8 459,111 + ABIE41_RS02295 0.65 -0.1 459,112 - ABIE41_RS02295 0.65 +1.5 459,112 - ABIE41_RS02295 0.65 -1.4 459,112 - ABIE41_RS02295 0.65 -0.1 459,121 - ABIE41_RS02295 0.65 -0.2 459,121 - ABIE41_RS02295 0.65 +0.2 459,180 + ABIE41_RS02295 0.69 +0.0 459,180 + ABIE41_RS02295 0.69 -0.5 459,181 - ABIE41_RS02295 0.69 +0.6 459,181 - ABIE41_RS02295 0.69 +0.4 459,181 - ABIE41_RS02295 0.69 -0.3 459,507 + -0.4 459,717 + -0.6 459,768 + +0.8 460,259 + ABIE41_RS02300 0.23 -0.0 460,259 + ABIE41_RS02300 0.23 +0.7 460,259 + ABIE41_RS02300 0.23 -0.3 460,259 + ABIE41_RS02300 0.23 +0.3 460,259 + ABIE41_RS02300 0.23 -1.2 460,260 - ABIE41_RS02300 0.23 -0.8 460,260 - ABIE41_RS02300 0.23 -0.4 460,260 - ABIE41_RS02300 0.23 +0.0 460,260 - ABIE41_RS02300 0.23 -0.5 460,260 - ABIE41_RS02300 0.23 +0.4 460,260 - ABIE41_RS02300 0.23 +0.1 460,260 - ABIE41_RS02300 0.23 -0.3 460,260 - ABIE41_RS02300 0.23 -0.2 460,445 + ABIE41_RS02300 0.49 -0.3 460,445 + ABIE41_RS02300 0.49 -0.2 460,446 - ABIE41_RS02300 0.49 -0.3 460,574 + ABIE41_RS02300 0.67 -0.4 460,575 - ABIE41_RS02300 0.67 -0.1 460,575 - ABIE41_RS02300 0.67 -0.3 460,575 - ABIE41_RS02300 0.67 -0.5 460,575 - ABIE41_RS02300 0.67 +0.2 460,646 + ABIE41_RS02300 0.77 -2.7 460,647 - ABIE41_RS02300 0.77 -0.0
Or see this region's nucleotide sequence