Strain Fitness in Escherichia coli ECRC101 around MCAODC_13285

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_13275 and MCAODC_13280 overlap by 4 nucleotidesMCAODC_13280 and MCAODC_13285 are separated by 187 nucleotidesMCAODC_13285 and MCAODC_13305 are separated by 191 nucleotidesMCAODC_13305 and MCAODC_13310 are separated by 74 nucleotides MCAODC_13275: MCAODC_13275 - endonuclease, at 2,611,222 to 2,611,824 _13275 MCAODC_13280: MCAODC_13280 - phage N-6-adenine-methyltransferase, at 2,611,821 to 2,612,348 _13280 MCAODC_13285: MCAODC_13285 - Putitave protein, at 2,612,536 to 2,612,604 _13285 MCAODC_13305: MCAODC_13305 - phage antirepressor Ant, at 2,612,796 to 2,613,470 _13305 MCAODC_13310: MCAODC_13310 - hypothetical protein, at 2,613,545 to 2,613,946 _13310 Position (kb) 2612 2613Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2611.586 kb on + strand, within MCAODC_13275at 2611.586 kb on + strand, within MCAODC_13275at 2611.590 kb on + strand, within MCAODC_13275at 2611.602 kb on + strand, within MCAODC_13275at 2611.630 kb on - strand, within MCAODC_13275at 2611.686 kb on + strand, within MCAODC_13275at 2611.737 kb on + strand, within MCAODC_13275at 2611.826 kb on + strandat 2612.077 kb on + strand, within MCAODC_13280at 2612.077 kb on + strand, within MCAODC_13280at 2612.078 kb on - strand, within MCAODC_13280at 2612.078 kb on - strand, within MCAODC_13280at 2612.078 kb on - strand, within MCAODC_13280at 2612.095 kb on + strand, within MCAODC_13280at 2612.095 kb on + strand, within MCAODC_13280at 2612.099 kb on + strand, within MCAODC_13280at 2612.099 kb on + strand, within MCAODC_13280at 2612.099 kb on + strand, within MCAODC_13280at 2612.099 kb on + strand, within MCAODC_13280at 2612.099 kb on + strand, within MCAODC_13280at 2612.100 kb on - strand, within MCAODC_13280at 2612.100 kb on - strand, within MCAODC_13280at 2612.117 kb on + strand, within MCAODC_13280at 2612.117 kb on + strand, within MCAODC_13280at 2612.118 kb on - strand, within MCAODC_13280at 2612.189 kb on + strand, within MCAODC_13280at 2612.190 kb on - strand, within MCAODC_13280at 2612.268 kb on - strand, within MCAODC_13280at 2612.288 kb on + strand, within MCAODC_13280at 2612.499 kb on + strandat 2612.518 kb on + strandat 2612.518 kb on + strandat 2612.519 kb on - strandat 2612.542 kb on + strandat 2612.552 kb on + strand, within MCAODC_13285at 2612.553 kb on - strand, within MCAODC_13285at 2612.553 kb on - strand, within MCAODC_13285at 2612.553 kb on - strand, within MCAODC_13285at 2612.554 kb on + strand, within MCAODC_13285at 2612.554 kb on + strand, within MCAODC_13285at 2612.554 kb on + strand, within MCAODC_13285at 2612.555 kb on - strand, within MCAODC_13285at 2612.639 kb on - strandat 2612.795 kb on + strandat 2612.796 kb on - strandat 2612.857 kb on + strandat 2612.869 kb on + strand, within MCAODC_13305at 2612.955 kb on + strand, within MCAODC_13305at 2612.955 kb on + strand, within MCAODC_13305at 2612.955 kb on + strand, within MCAODC_13305at 2612.956 kb on - strand, within MCAODC_13305at 2613.006 kb on + strand, within MCAODC_13305at 2613.006 kb on + strand, within MCAODC_13305at 2613.007 kb on - strand, within MCAODC_13305at 2613.129 kb on + strand, within MCAODC_13305at 2613.129 kb on + strand, within MCAODC_13305at 2613.262 kb on - strand, within MCAODC_13305at 2613.262 kb on - strand, within MCAODC_13305at 2613.292 kb on - strand, within MCAODC_13305at 2613.292 kb on - strand, within MCAODC_13305at 2613.302 kb on - strand, within MCAODC_13305at 2613.302 kb on - strand, within MCAODC_13305at 2613.319 kb on - strand, within MCAODC_13305at 2613.332 kb on + strand, within MCAODC_13305at 2613.332 kb on + strand, within MCAODC_13305at 2613.362 kb on + strand, within MCAODC_13305at 2613.379 kb on + strand, within MCAODC_13305at 2613.379 kb on + strand, within MCAODC_13305at 2613.380 kb on - strand, within MCAODC_13305at 2613.380 kb on - strand, within MCAODC_13305at 2613.380 kb on - strand, within MCAODC_13305at 2613.380 kb on - strand, within MCAODC_13305at 2613.383 kb on + strand, within MCAODC_13305at 2613.383 kb on + strand, within MCAODC_13305at 2613.383 kb on + strand, within MCAODC_13305at 2613.383 kb on + strand, within MCAODC_13305at 2613.383 kb on + strand, within MCAODC_13305at 2613.384 kb on - strand, within MCAODC_13305at 2613.384 kb on - strand, within MCAODC_13305at 2613.384 kb on - strand, within MCAODC_13305at 2613.384 kb on - strand, within MCAODC_13305at 2613.384 kb on - strand, within MCAODC_13305at 2613.431 kb on + strandat 2613.552 kb on + strandat 2613.575 kb on - strandat 2613.575 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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2,611,586 + MCAODC_13275 0.60 +0.4
2,611,586 + MCAODC_13275 0.60 -0.4
2,611,590 + MCAODC_13275 0.61 +1.8
2,611,602 + MCAODC_13275 0.63 -1.3
2,611,630 - MCAODC_13275 0.68 +1.3
2,611,686 + MCAODC_13275 0.77 +0.1
2,611,737 + MCAODC_13275 0.85 +0.6
2,611,826 + +1.9
2,612,077 + MCAODC_13280 0.48 +0.2
2,612,077 + MCAODC_13280 0.48 +0.6
2,612,078 - MCAODC_13280 0.49 -0.0
2,612,078 - MCAODC_13280 0.49 +0.2
2,612,078 - MCAODC_13280 0.49 -0.3
2,612,095 + MCAODC_13280 0.52 -0.4
2,612,095 + MCAODC_13280 0.52 -0.5
2,612,099 + MCAODC_13280 0.53 -0.3
2,612,099 + MCAODC_13280 0.53 +0.7
2,612,099 + MCAODC_13280 0.53 +0.2
2,612,099 + MCAODC_13280 0.53 +0.0
2,612,099 + MCAODC_13280 0.53 +0.7
2,612,100 - MCAODC_13280 0.53 +1.2
2,612,100 - MCAODC_13280 0.53 -0.3
2,612,117 + MCAODC_13280 0.56 -0.1
2,612,117 + MCAODC_13280 0.56 -0.4
2,612,118 - MCAODC_13280 0.56 -0.7
2,612,189 + MCAODC_13280 0.70 -0.4
2,612,190 - MCAODC_13280 0.70 -0.1
2,612,268 - MCAODC_13280 0.85 -1.5
2,612,288 + MCAODC_13280 0.88 -0.8
2,612,499 + -0.1
2,612,518 + +0.3
2,612,518 + +0.6
2,612,519 - -0.2
2,612,542 + -0.5
2,612,552 + MCAODC_13285 0.23 +0.0
2,612,553 - MCAODC_13285 0.25 +0.4
2,612,553 - MCAODC_13285 0.25 +0.4
2,612,553 - MCAODC_13285 0.25 +0.5
2,612,554 + MCAODC_13285 0.26 +0.5
2,612,554 + MCAODC_13285 0.26 +0.2
2,612,554 + MCAODC_13285 0.26 +2.6
2,612,555 - MCAODC_13285 0.28 +1.2
2,612,639 - +1.4
2,612,795 + -0.5
2,612,796 - +0.0
2,612,857 + -0.4
2,612,869 + MCAODC_13305 0.11 +1.4
2,612,955 + MCAODC_13305 0.24 -0.5
2,612,955 + MCAODC_13305 0.24 +0.5
2,612,955 + MCAODC_13305 0.24 +0.5
2,612,956 - MCAODC_13305 0.24 +0.6
2,613,006 + MCAODC_13305 0.31 +1.0
2,613,006 + MCAODC_13305 0.31 -0.9
2,613,007 - MCAODC_13305 0.31 +1.1
2,613,129 + MCAODC_13305 0.49 -0.4
2,613,129 + MCAODC_13305 0.49 +1.4
2,613,262 - MCAODC_13305 0.69 +0.8
2,613,262 - MCAODC_13305 0.69 -0.8
2,613,292 - MCAODC_13305 0.73 +1.8
2,613,292 - MCAODC_13305 0.73 +0.2
2,613,302 - MCAODC_13305 0.75 +0.4
2,613,302 - MCAODC_13305 0.75 -0.8
2,613,319 - MCAODC_13305 0.77 -1.7
2,613,332 + MCAODC_13305 0.79 -2.2
2,613,332 + MCAODC_13305 0.79 +0.8
2,613,362 + MCAODC_13305 0.84 +1.5
2,613,379 + MCAODC_13305 0.86 +1.4
2,613,379 + MCAODC_13305 0.86 -1.0
2,613,380 - MCAODC_13305 0.87 +0.4
2,613,380 - MCAODC_13305 0.87 -0.1
2,613,380 - MCAODC_13305 0.87 +1.1
2,613,380 - MCAODC_13305 0.87 +1.0
2,613,383 + MCAODC_13305 0.87 -1.5
2,613,383 + MCAODC_13305 0.87 +0.2
2,613,383 + MCAODC_13305 0.87 +0.5
2,613,383 + MCAODC_13305 0.87 -0.3
2,613,383 + MCAODC_13305 0.87 -0.7
2,613,384 - MCAODC_13305 0.87 +0.0
2,613,384 - MCAODC_13305 0.87 +0.2
2,613,384 - MCAODC_13305 0.87 -0.8
2,613,384 - MCAODC_13305 0.87 +2.0
2,613,384 - MCAODC_13305 0.87 -0.4
2,613,431 + -0.9
2,613,552 + -1.9
2,613,575 - -1.7
2,613,575 - -2.8

Or see this region's nucleotide sequence