Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_13275 and MCAODC_13280 overlap by 4 nucleotides MCAODC_13280 and MCAODC_13285 are separated by 187 nucleotides MCAODC_13285 and MCAODC_13305 are separated by 191 nucleotides MCAODC_13305 and MCAODC_13310 are separated by 74 nucleotides
MCAODC_13275: MCAODC_13275 - endonuclease, at 2,611,222 to 2,611,824
_13275
MCAODC_13280: MCAODC_13280 - phage N-6-adenine-methyltransferase, at 2,611,821 to 2,612,348
_13280
MCAODC_13285: MCAODC_13285 - Putitave protein, at 2,612,536 to 2,612,604
_13285
MCAODC_13305: MCAODC_13305 - phage antirepressor Ant, at 2,612,796 to 2,613,470
_13305
MCAODC_13310: MCAODC_13310 - hypothetical protein, at 2,613,545 to 2,613,946
_13310
Position (kb)
2612
2613 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2611.586 kb on + strand, within MCAODC_13275 at 2611.586 kb on + strand, within MCAODC_13275 at 2611.590 kb on + strand, within MCAODC_13275 at 2611.602 kb on + strand, within MCAODC_13275 at 2611.630 kb on - strand, within MCAODC_13275 at 2611.686 kb on + strand, within MCAODC_13275 at 2611.737 kb on + strand, within MCAODC_13275 at 2611.826 kb on + strand at 2612.077 kb on + strand, within MCAODC_13280 at 2612.077 kb on + strand, within MCAODC_13280 at 2612.078 kb on - strand, within MCAODC_13280 at 2612.078 kb on - strand, within MCAODC_13280 at 2612.078 kb on - strand, within MCAODC_13280 at 2612.095 kb on + strand, within MCAODC_13280 at 2612.095 kb on + strand, within MCAODC_13280 at 2612.099 kb on + strand, within MCAODC_13280 at 2612.099 kb on + strand, within MCAODC_13280 at 2612.099 kb on + strand, within MCAODC_13280 at 2612.099 kb on + strand, within MCAODC_13280 at 2612.099 kb on + strand, within MCAODC_13280 at 2612.100 kb on - strand, within MCAODC_13280 at 2612.100 kb on - strand, within MCAODC_13280 at 2612.117 kb on + strand, within MCAODC_13280 at 2612.117 kb on + strand, within MCAODC_13280 at 2612.118 kb on - strand, within MCAODC_13280 at 2612.189 kb on + strand, within MCAODC_13280 at 2612.190 kb on - strand, within MCAODC_13280 at 2612.268 kb on - strand, within MCAODC_13280 at 2612.288 kb on + strand, within MCAODC_13280 at 2612.499 kb on + strand at 2612.518 kb on + strand at 2612.518 kb on + strand at 2612.519 kb on - strand at 2612.542 kb on + strand at 2612.552 kb on + strand, within MCAODC_13285 at 2612.553 kb on - strand, within MCAODC_13285 at 2612.553 kb on - strand, within MCAODC_13285 at 2612.553 kb on - strand, within MCAODC_13285 at 2612.554 kb on + strand, within MCAODC_13285 at 2612.554 kb on + strand, within MCAODC_13285 at 2612.554 kb on + strand, within MCAODC_13285 at 2612.555 kb on - strand, within MCAODC_13285 at 2612.639 kb on - strand at 2612.795 kb on + strand at 2612.796 kb on - strand at 2612.857 kb on + strand at 2612.869 kb on + strand, within MCAODC_13305 at 2612.955 kb on + strand, within MCAODC_13305 at 2612.955 kb on + strand, within MCAODC_13305 at 2612.955 kb on + strand, within MCAODC_13305 at 2612.956 kb on - strand, within MCAODC_13305 at 2613.006 kb on + strand, within MCAODC_13305 at 2613.006 kb on + strand, within MCAODC_13305 at 2613.007 kb on - strand, within MCAODC_13305 at 2613.129 kb on + strand, within MCAODC_13305 at 2613.129 kb on + strand, within MCAODC_13305 at 2613.262 kb on - strand, within MCAODC_13305 at 2613.262 kb on - strand, within MCAODC_13305 at 2613.292 kb on - strand, within MCAODC_13305 at 2613.292 kb on - strand, within MCAODC_13305 at 2613.302 kb on - strand, within MCAODC_13305 at 2613.302 kb on - strand, within MCAODC_13305 at 2613.319 kb on - strand, within MCAODC_13305 at 2613.332 kb on + strand, within MCAODC_13305 at 2613.332 kb on + strand, within MCAODC_13305 at 2613.362 kb on + strand, within MCAODC_13305 at 2613.379 kb on + strand, within MCAODC_13305 at 2613.379 kb on + strand, within MCAODC_13305 at 2613.380 kb on - strand, within MCAODC_13305 at 2613.380 kb on - strand, within MCAODC_13305 at 2613.380 kb on - strand, within MCAODC_13305 at 2613.380 kb on - strand, within MCAODC_13305 at 2613.383 kb on + strand, within MCAODC_13305 at 2613.383 kb on + strand, within MCAODC_13305 at 2613.383 kb on + strand, within MCAODC_13305 at 2613.383 kb on + strand, within MCAODC_13305 at 2613.383 kb on + strand, within MCAODC_13305 at 2613.384 kb on - strand, within MCAODC_13305 at 2613.384 kb on - strand, within MCAODC_13305 at 2613.384 kb on - strand, within MCAODC_13305 at 2613.384 kb on - strand, within MCAODC_13305 at 2613.384 kb on - strand, within MCAODC_13305 at 2613.431 kb on + strand at 2613.552 kb on + strand at 2613.575 kb on - strand at 2613.575 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 2,611,586 + MCAODC_13275 0.60 +0.4 2,611,586 + MCAODC_13275 0.60 -0.4 2,611,590 + MCAODC_13275 0.61 +1.8 2,611,602 + MCAODC_13275 0.63 -1.3 2,611,630 - MCAODC_13275 0.68 +1.3 2,611,686 + MCAODC_13275 0.77 +0.1 2,611,737 + MCAODC_13275 0.85 +0.6 2,611,826 + +1.9 2,612,077 + MCAODC_13280 0.48 +0.2 2,612,077 + MCAODC_13280 0.48 +0.6 2,612,078 - MCAODC_13280 0.49 -0.0 2,612,078 - MCAODC_13280 0.49 +0.2 2,612,078 - MCAODC_13280 0.49 -0.3 2,612,095 + MCAODC_13280 0.52 -0.4 2,612,095 + MCAODC_13280 0.52 -0.5 2,612,099 + MCAODC_13280 0.53 -0.3 2,612,099 + MCAODC_13280 0.53 +0.7 2,612,099 + MCAODC_13280 0.53 +0.2 2,612,099 + MCAODC_13280 0.53 +0.0 2,612,099 + MCAODC_13280 0.53 +0.7 2,612,100 - MCAODC_13280 0.53 +1.2 2,612,100 - MCAODC_13280 0.53 -0.3 2,612,117 + MCAODC_13280 0.56 -0.1 2,612,117 + MCAODC_13280 0.56 -0.4 2,612,118 - MCAODC_13280 0.56 -0.7 2,612,189 + MCAODC_13280 0.70 -0.4 2,612,190 - MCAODC_13280 0.70 -0.1 2,612,268 - MCAODC_13280 0.85 -1.5 2,612,288 + MCAODC_13280 0.88 -0.8 2,612,499 + -0.1 2,612,518 + +0.3 2,612,518 + +0.6 2,612,519 - -0.2 2,612,542 + -0.5 2,612,552 + MCAODC_13285 0.23 +0.0 2,612,553 - MCAODC_13285 0.25 +0.4 2,612,553 - MCAODC_13285 0.25 +0.4 2,612,553 - MCAODC_13285 0.25 +0.5 2,612,554 + MCAODC_13285 0.26 +0.5 2,612,554 + MCAODC_13285 0.26 +0.2 2,612,554 + MCAODC_13285 0.26 +2.6 2,612,555 - MCAODC_13285 0.28 +1.2 2,612,639 - +1.4 2,612,795 + -0.5 2,612,796 - +0.0 2,612,857 + -0.4 2,612,869 + MCAODC_13305 0.11 +1.4 2,612,955 + MCAODC_13305 0.24 -0.5 2,612,955 + MCAODC_13305 0.24 +0.5 2,612,955 + MCAODC_13305 0.24 +0.5 2,612,956 - MCAODC_13305 0.24 +0.6 2,613,006 + MCAODC_13305 0.31 +1.0 2,613,006 + MCAODC_13305 0.31 -0.9 2,613,007 - MCAODC_13305 0.31 +1.1 2,613,129 + MCAODC_13305 0.49 -0.4 2,613,129 + MCAODC_13305 0.49 +1.4 2,613,262 - MCAODC_13305 0.69 +0.8 2,613,262 - MCAODC_13305 0.69 -0.8 2,613,292 - MCAODC_13305 0.73 +1.8 2,613,292 - MCAODC_13305 0.73 +0.2 2,613,302 - MCAODC_13305 0.75 +0.4 2,613,302 - MCAODC_13305 0.75 -0.8 2,613,319 - MCAODC_13305 0.77 -1.7 2,613,332 + MCAODC_13305 0.79 -2.2 2,613,332 + MCAODC_13305 0.79 +0.8 2,613,362 + MCAODC_13305 0.84 +1.5 2,613,379 + MCAODC_13305 0.86 +1.4 2,613,379 + MCAODC_13305 0.86 -1.0 2,613,380 - MCAODC_13305 0.87 +0.4 2,613,380 - MCAODC_13305 0.87 -0.1 2,613,380 - MCAODC_13305 0.87 +1.1 2,613,380 - MCAODC_13305 0.87 +1.0 2,613,383 + MCAODC_13305 0.87 -1.5 2,613,383 + MCAODC_13305 0.87 +0.2 2,613,383 + MCAODC_13305 0.87 +0.5 2,613,383 + MCAODC_13305 0.87 -0.3 2,613,383 + MCAODC_13305 0.87 -0.7 2,613,384 - MCAODC_13305 0.87 +0.0 2,613,384 - MCAODC_13305 0.87 +0.2 2,613,384 - MCAODC_13305 0.87 -0.8 2,613,384 - MCAODC_13305 0.87 +2.0 2,613,384 - MCAODC_13305 0.87 -0.4 2,613,431 + -0.9 2,613,552 + -1.9 2,613,575 - -1.7 2,613,575 - -2.8
Or see this region's nucleotide sequence