Strain Fitness in Bosea sp. OAE506 around ABIE41_RS23535

Experiment: Ying_all64 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS23525 and ABIE41_RS23530 are separated by 5 nucleotidesABIE41_RS23530 and ABIE41_RS23535 are separated by 7 nucleotidesABIE41_RS23535 and ABIE41_RS23540 are separated by 106 nucleotides ABIE41_RS23525: ABIE41_RS23525 - ABC transporter ATP-binding protein, at 4,845,039 to 4,845,890 _RS23525 ABIE41_RS23530: ABIE41_RS23530 - nickel transporter permease, at 4,845,896 to 4,846,786 _RS23530 ABIE41_RS23535: ABIE41_RS23535 - ABC transporter permease, at 4,846,794 to 4,847,858 _RS23535 ABIE41_RS23540: ABIE41_RS23540 - ABC transporter substrate-binding protein, at 4,847,965 to 4,849,461 _RS23540 Position (kb) 4846 4847 4848Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4846.215 kb on + strand, within ABIE41_RS23530at 4846.215 kb on + strand, within ABIE41_RS23530at 4846.215 kb on + strand, within ABIE41_RS23530at 4846.215 kb on + strand, within ABIE41_RS23530at 4846.216 kb on - strand, within ABIE41_RS23530at 4846.216 kb on - strand, within ABIE41_RS23530at 4846.216 kb on - strand, within ABIE41_RS23530at 4846.216 kb on - strand, within ABIE41_RS23530at 4846.216 kb on - strand, within ABIE41_RS23530at 4846.216 kb on - strand, within ABIE41_RS23530at 4846.263 kb on + strand, within ABIE41_RS23530at 4846.263 kb on + strand, within ABIE41_RS23530at 4846.263 kb on + strand, within ABIE41_RS23530at 4846.263 kb on + strand, within ABIE41_RS23530at 4846.264 kb on - strand, within ABIE41_RS23530at 4846.264 kb on - strand, within ABIE41_RS23530at 4846.503 kb on + strand, within ABIE41_RS23530at 4846.503 kb on + strand, within ABIE41_RS23530at 4846.713 kb on + strandat 4846.713 kb on + strandat 4846.714 kb on - strandat 4846.768 kb on - strandat 4846.927 kb on + strand, within ABIE41_RS23535at 4846.993 kb on + strand, within ABIE41_RS23535at 4846.993 kb on + strand, within ABIE41_RS23535at 4846.993 kb on + strand, within ABIE41_RS23535at 4846.993 kb on + strand, within ABIE41_RS23535at 4846.993 kb on + strand, within ABIE41_RS23535at 4846.993 kb on + strand, within ABIE41_RS23535at 4846.993 kb on + strand, within ABIE41_RS23535at 4846.993 kb on + strand, within ABIE41_RS23535at 4846.994 kb on - strand, within ABIE41_RS23535at 4846.994 kb on - strand, within ABIE41_RS23535at 4846.994 kb on - strand, within ABIE41_RS23535at 4846.994 kb on - strand, within ABIE41_RS23535at 4847.098 kb on + strand, within ABIE41_RS23535at 4847.099 kb on - strand, within ABIE41_RS23535at 4847.099 kb on - strand, within ABIE41_RS23535at 4847.099 kb on - strand, within ABIE41_RS23535at 4847.099 kb on - strand, within ABIE41_RS23535at 4847.099 kb on - strand, within ABIE41_RS23535at 4847.099 kb on - strand, within ABIE41_RS23535at 4847.099 kb on - strand, within ABIE41_RS23535at 4847.124 kb on - strand, within ABIE41_RS23535at 4847.148 kb on - strand, within ABIE41_RS23535at 4847.149 kb on + strand, within ABIE41_RS23535at 4847.149 kb on + strand, within ABIE41_RS23535at 4847.149 kb on + strand, within ABIE41_RS23535at 4847.150 kb on - strand, within ABIE41_RS23535at 4847.150 kb on - strand, within ABIE41_RS23535at 4847.150 kb on - strand, within ABIE41_RS23535at 4847.150 kb on - strand, within ABIE41_RS23535at 4847.332 kb on + strand, within ABIE41_RS23535at 4847.332 kb on + strand, within ABIE41_RS23535at 4847.332 kb on + strand, within ABIE41_RS23535at 4847.333 kb on - strand, within ABIE41_RS23535at 4847.333 kb on - strand, within ABIE41_RS23535at 4847.333 kb on - strand, within ABIE41_RS23535at 4847.333 kb on - strand, within ABIE41_RS23535at 4847.333 kb on - strand, within ABIE41_RS23535at 4847.432 kb on - strand, within ABIE41_RS23535at 4847.597 kb on - strand, within ABIE41_RS23535at 4847.597 kb on - strand, within ABIE41_RS23535at 4847.656 kb on + strand, within ABIE41_RS23535at 4847.656 kb on + strand, within ABIE41_RS23535at 4847.656 kb on + strand, within ABIE41_RS23535at 4847.656 kb on + strand, within ABIE41_RS23535at 4847.656 kb on + strand, within ABIE41_RS23535at 4847.695 kb on - strand, within ABIE41_RS23535at 4847.988 kb on - strandat 4848.089 kb on + strandat 4848.116 kb on + strand, within ABIE41_RS23540at 4848.117 kb on - strand, within ABIE41_RS23540at 4848.117 kb on - strand, within ABIE41_RS23540at 4848.284 kb on + strand, within ABIE41_RS23540at 4848.308 kb on + strand, within ABIE41_RS23540at 4848.308 kb on + strand, within ABIE41_RS23540at 4848.308 kb on + strand, within ABIE41_RS23540at 4848.308 kb on + strand, within ABIE41_RS23540at 4848.308 kb on + strand, within ABIE41_RS23540at 4848.308 kb on + strand, within ABIE41_RS23540at 4848.309 kb on - strand, within ABIE41_RS23540at 4848.309 kb on - strand, within ABIE41_RS23540at 4848.309 kb on - strand, within ABIE41_RS23540at 4848.309 kb on - strand, within ABIE41_RS23540at 4848.309 kb on - strand, within ABIE41_RS23540at 4848.309 kb on - strand, within ABIE41_RS23540at 4848.309 kb on - strand, within ABIE41_RS23540at 4848.309 kb on - strand, within ABIE41_RS23540at 4848.309 kb on - strand, within ABIE41_RS23540at 4848.333 kb on - strand, within ABIE41_RS23540at 4848.457 kb on + strand, within ABIE41_RS23540at 4848.457 kb on + strand, within ABIE41_RS23540at 4848.517 kb on + strand, within ABIE41_RS23540at 4848.518 kb on + strand, within ABIE41_RS23540at 4848.518 kb on + strand, within ABIE41_RS23540at 4848.518 kb on + strand, within ABIE41_RS23540at 4848.519 kb on - strand, within ABIE41_RS23540at 4848.519 kb on - strand, within ABIE41_RS23540at 4848.519 kb on - strand, within ABIE41_RS23540at 4848.519 kb on - strand, within ABIE41_RS23540at 4848.519 kb on - strand, within ABIE41_RS23540at 4848.519 kb on - strand, within ABIE41_RS23540at 4848.519 kb on - strand, within ABIE41_RS23540at 4848.519 kb on - strand, within ABIE41_RS23540at 4848.519 kb on - strand, within ABIE41_RS23540at 4848.519 kb on - strand, within ABIE41_RS23540at 4848.519 kb on - strand, within ABIE41_RS23540at 4848.524 kb on + strand, within ABIE41_RS23540at 4848.524 kb on + strand, within ABIE41_RS23540at 4848.524 kb on + strand, within ABIE41_RS23540at 4848.525 kb on - strand, within ABIE41_RS23540at 4848.525 kb on - strand, within ABIE41_RS23540at 4848.525 kb on - strand, within ABIE41_RS23540at 4848.526 kb on - strand, within ABIE41_RS23540at 4848.584 kb on + strand, within ABIE41_RS23540at 4848.585 kb on - strand, within ABIE41_RS23540at 4848.585 kb on - strand, within ABIE41_RS23540at 4848.620 kb on + strand, within ABIE41_RS23540at 4848.632 kb on + strand, within ABIE41_RS23540at 4848.632 kb on + strand, within ABIE41_RS23540at 4848.632 kb on + strand, within ABIE41_RS23540at 4848.632 kb on + strand, within ABIE41_RS23540at 4848.632 kb on + strand, within ABIE41_RS23540at 4848.633 kb on - strand, within ABIE41_RS23540at 4848.696 kb on - strand, within ABIE41_RS23540at 4848.704 kb on + strand, within ABIE41_RS23540at 4848.704 kb on + strand, within ABIE41_RS23540at 4848.704 kb on + strand, within ABIE41_RS23540at 4848.705 kb on - strand, within ABIE41_RS23540at 4848.705 kb on - strand, within ABIE41_RS23540at 4848.743 kb on + strand, within ABIE41_RS23540

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1
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4,846,215 + ABIE41_RS23530 0.36 -1.5
4,846,215 + ABIE41_RS23530 0.36 +0.8
4,846,215 + ABIE41_RS23530 0.36 +0.1
4,846,215 + ABIE41_RS23530 0.36 -0.4
4,846,216 - ABIE41_RS23530 0.36 +0.3
4,846,216 - ABIE41_RS23530 0.36 -0.1
4,846,216 - ABIE41_RS23530 0.36 +0.6
4,846,216 - ABIE41_RS23530 0.36 -0.8
4,846,216 - ABIE41_RS23530 0.36 -0.1
4,846,216 - ABIE41_RS23530 0.36 -0.9
4,846,263 + ABIE41_RS23530 0.41 +0.7
4,846,263 + ABIE41_RS23530 0.41 +0.3
4,846,263 + ABIE41_RS23530 0.41 +0.5
4,846,263 + ABIE41_RS23530 0.41 +0.4
4,846,264 - ABIE41_RS23530 0.41 +2.5
4,846,264 - ABIE41_RS23530 0.41 +0.1
4,846,503 + ABIE41_RS23530 0.68 -0.0
4,846,503 + ABIE41_RS23530 0.68 +0.2
4,846,713 + -0.4
4,846,713 + +0.1
4,846,714 - -0.0
4,846,768 - -0.5
4,846,927 + ABIE41_RS23535 0.12 +1.3
4,846,993 + ABIE41_RS23535 0.19 -0.0
4,846,993 + ABIE41_RS23535 0.19 +0.5
4,846,993 + ABIE41_RS23535 0.19 +0.4
4,846,993 + ABIE41_RS23535 0.19 +1.0
4,846,993 + ABIE41_RS23535 0.19 +1.6
4,846,993 + ABIE41_RS23535 0.19 +1.6
4,846,993 + ABIE41_RS23535 0.19 -0.0
4,846,993 + ABIE41_RS23535 0.19 +0.0
4,846,994 - ABIE41_RS23535 0.19 +0.4
4,846,994 - ABIE41_RS23535 0.19 -0.6
4,846,994 - ABIE41_RS23535 0.19 +1.2
4,846,994 - ABIE41_RS23535 0.19 +0.5
4,847,098 + ABIE41_RS23535 0.29 +1.5
4,847,099 - ABIE41_RS23535 0.29 -0.0
4,847,099 - ABIE41_RS23535 0.29 -1.5
4,847,099 - ABIE41_RS23535 0.29 +1.7
4,847,099 - ABIE41_RS23535 0.29 +0.0
4,847,099 - ABIE41_RS23535 0.29 +0.6
4,847,099 - ABIE41_RS23535 0.29 -0.1
4,847,099 - ABIE41_RS23535 0.29 -0.6
4,847,124 - ABIE41_RS23535 0.31 -2.9
4,847,148 - ABIE41_RS23535 0.33 +0.1
4,847,149 + ABIE41_RS23535 0.33 +0.1
4,847,149 + ABIE41_RS23535 0.33 -1.6
4,847,149 + ABIE41_RS23535 0.33 +0.0
4,847,150 - ABIE41_RS23535 0.33 -0.0
4,847,150 - ABIE41_RS23535 0.33 -0.8
4,847,150 - ABIE41_RS23535 0.33 +0.7
4,847,150 - ABIE41_RS23535 0.33 -1.1
4,847,332 + ABIE41_RS23535 0.51 +0.9
4,847,332 + ABIE41_RS23535 0.51 +0.1
4,847,332 + ABIE41_RS23535 0.51 -0.4
4,847,333 - ABIE41_RS23535 0.51 +0.7
4,847,333 - ABIE41_RS23535 0.51 +1.5
4,847,333 - ABIE41_RS23535 0.51 +0.8
4,847,333 - ABIE41_RS23535 0.51 -1.0
4,847,333 - ABIE41_RS23535 0.51 -0.1
4,847,432 - ABIE41_RS23535 0.60 -0.7
4,847,597 - ABIE41_RS23535 0.75 -0.4
4,847,597 - ABIE41_RS23535 0.75 +0.3
4,847,656 + ABIE41_RS23535 0.81 +0.1
4,847,656 + ABIE41_RS23535 0.81 -1.0
4,847,656 + ABIE41_RS23535 0.81 -0.2
4,847,656 + ABIE41_RS23535 0.81 +0.3
4,847,656 + ABIE41_RS23535 0.81 +1.2
4,847,695 - ABIE41_RS23535 0.85 +0.1
4,847,988 - -0.6
4,848,089 + +0.1
4,848,116 + ABIE41_RS23540 0.10 +0.6
4,848,117 - ABIE41_RS23540 0.10 +0.7
4,848,117 - ABIE41_RS23540 0.10 +0.9
4,848,284 + ABIE41_RS23540 0.21 +0.4
4,848,308 + ABIE41_RS23540 0.23 -0.1
4,848,308 + ABIE41_RS23540 0.23 -0.2
4,848,308 + ABIE41_RS23540 0.23 +0.2
4,848,308 + ABIE41_RS23540 0.23 -3.0
4,848,308 + ABIE41_RS23540 0.23 -0.5
4,848,308 + ABIE41_RS23540 0.23 -2.9
4,848,309 - ABIE41_RS23540 0.23 -0.2
4,848,309 - ABIE41_RS23540 0.23 -0.5
4,848,309 - ABIE41_RS23540 0.23 +0.5
4,848,309 - ABIE41_RS23540 0.23 -0.4
4,848,309 - ABIE41_RS23540 0.23 -0.8
4,848,309 - ABIE41_RS23540 0.23 -0.8
4,848,309 - ABIE41_RS23540 0.23 -1.2
4,848,309 - ABIE41_RS23540 0.23 -1.1
4,848,309 - ABIE41_RS23540 0.23 -0.5
4,848,333 - ABIE41_RS23540 0.25 +0.5
4,848,457 + ABIE41_RS23540 0.33 -1.0
4,848,457 + ABIE41_RS23540 0.33 -0.9
4,848,517 + ABIE41_RS23540 0.37 -0.1
4,848,518 + ABIE41_RS23540 0.37 -0.5
4,848,518 + ABIE41_RS23540 0.37 -0.4
4,848,518 + ABIE41_RS23540 0.37 -1.7
4,848,519 - ABIE41_RS23540 0.37 +4.1
4,848,519 - ABIE41_RS23540 0.37 -0.5
4,848,519 - ABIE41_RS23540 0.37 -0.4
4,848,519 - ABIE41_RS23540 0.37 +0.1
4,848,519 - ABIE41_RS23540 0.37 +0.3
4,848,519 - ABIE41_RS23540 0.37 -2.2
4,848,519 - ABIE41_RS23540 0.37 -0.5
4,848,519 - ABIE41_RS23540 0.37 +0.3
4,848,519 - ABIE41_RS23540 0.37 -0.1
4,848,519 - ABIE41_RS23540 0.37 +0.3
4,848,519 - ABIE41_RS23540 0.37 +0.8
4,848,524 + ABIE41_RS23540 0.37 -1.3
4,848,524 + ABIE41_RS23540 0.37 -0.7
4,848,524 + ABIE41_RS23540 0.37 +0.5
4,848,525 - ABIE41_RS23540 0.37 +1.3
4,848,525 - ABIE41_RS23540 0.37 +0.4
4,848,525 - ABIE41_RS23540 0.37 -2.1
4,848,526 - ABIE41_RS23540 0.37 +1.8
4,848,584 + ABIE41_RS23540 0.41 +1.0
4,848,585 - ABIE41_RS23540 0.41 -1.8
4,848,585 - ABIE41_RS23540 0.41 +0.4
4,848,620 + ABIE41_RS23540 0.44 +0.7
4,848,632 + ABIE41_RS23540 0.45 -0.9
4,848,632 + ABIE41_RS23540 0.45 -0.1
4,848,632 + ABIE41_RS23540 0.45 -0.8
4,848,632 + ABIE41_RS23540 0.45 -0.0
4,848,632 + ABIE41_RS23540 0.45 -0.2
4,848,633 - ABIE41_RS23540 0.45 -0.1
4,848,696 - ABIE41_RS23540 0.49 -0.1
4,848,704 + ABIE41_RS23540 0.49 +0.9
4,848,704 + ABIE41_RS23540 0.49 -0.5
4,848,704 + ABIE41_RS23540 0.49 +1.0
4,848,705 - ABIE41_RS23540 0.49 -1.1
4,848,705 - ABIE41_RS23540 0.49 +0.2
4,848,743 + ABIE41_RS23540 0.52 -1.3

Or see this region's nucleotide sequence