Strain Fitness in Bosea sp. OAE506 around ABIE41_RS22435

Experiment: Ying_all64 rep C; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS22425 and ABIE41_RS22430 are separated by 19 nucleotidesABIE41_RS22430 and ABIE41_RS22435 are separated by 31 nucleotidesABIE41_RS22435 and ABIE41_RS22440 are separated by 15 nucleotides ABIE41_RS22425: ABIE41_RS22425 - DUF2336 domain-containing protein, at 4,616,765 to 4,617,898 _RS22425 ABIE41_RS22430: ABIE41_RS22430 - DUF1491 family protein, at 4,617,918 to 4,618,253 _RS22430 ABIE41_RS22435: ABIE41_RS22435 - hypothetical protein, at 4,618,285 to 4,618,899 _RS22435 ABIE41_RS22440: ABIE41_RS22440 - PAS domain-containing sensor histidine kinase, at 4,618,915 to 4,620,684 _RS22440 Position (kb) 4618 4619Strain fitness (log2 ratio) -1 0 1at 4617.912 kb on + strandat 4617.912 kb on + strandat 4617.913 kb on - strandat 4618.978 kb on - strandat 4618.978 kb on - strandat 4619.136 kb on - strand, within ABIE41_RS22440at 4619.136 kb on - strand, within ABIE41_RS22440at 4619.568 kb on - strand, within ABIE41_RS22440

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1
remove
4,617,912 + -0.1
4,617,912 + +1.2
4,617,913 - +0.3
4,618,978 - +0.3
4,618,978 - +0.5
4,619,136 - ABIE41_RS22440 0.12 -1.6
4,619,136 - ABIE41_RS22440 0.12 -1.1
4,619,568 - ABIE41_RS22440 0.37 -0.5

Or see this region's nucleotide sequence