Experiment: Ying_all64 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS22425 and ABIE41_RS22430 are separated by 19 nucleotides ABIE41_RS22430 and ABIE41_RS22435 are separated by 31 nucleotides ABIE41_RS22435 and ABIE41_RS22440 are separated by 15 nucleotides
ABIE41_RS22425: ABIE41_RS22425 - DUF2336 domain-containing protein, at 4,616,765 to 4,617,898
_RS22425
ABIE41_RS22430: ABIE41_RS22430 - DUF1491 family protein, at 4,617,918 to 4,618,253
_RS22430
ABIE41_RS22435: ABIE41_RS22435 - hypothetical protein, at 4,618,285 to 4,618,899
_RS22435
ABIE41_RS22440: ABIE41_RS22440 - PAS domain-containing sensor histidine kinase, at 4,618,915 to 4,620,684
_RS22440
Position (kb) 4617
4618
4619 Strain fitness (log2 ratio) -1
0
1 at 4617.171 kb on + strand, within ABIE41_RS22425 at 4617.172 kb on - strand, within ABIE41_RS22425 at 4617.912 kb on + strand at 4617.912 kb on + strand at 4617.913 kb on - strand at 4618.978 kb on - strand at 4618.978 kb on - strand at 4619.136 kb on - strand, within ABIE41_RS22440 at 4619.136 kb on - strand, within ABIE41_RS22440
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1 remove 4,617,171 + ABIE41_RS22425 0.36 -0.1 4,617,172 - ABIE41_RS22425 0.36 -0.1 4,617,912 + -0.1 4,617,912 + +1.2 4,617,913 - +0.3 4,618,978 - +0.3 4,618,978 - +0.5 4,619,136 - ABIE41_RS22440 0.12 -1.6 4,619,136 - ABIE41_RS22440 0.12 -1.1
Or see this region's nucleotide sequence