Experiment: Ying_all64 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS22415 and ABIE41_RS22420 are separated by 32 nucleotides ABIE41_RS22420 and ABIE41_RS22425 are separated by 143 nucleotides ABIE41_RS22425 and ABIE41_RS22430 are separated by 19 nucleotides ABIE41_RS22430 and ABIE41_RS22435 are separated by 31 nucleotides
ABIE41_RS22415: ABIE41_RS22415 - hypothetical protein, at 4,615,591 to 4,616,358
_RS22415
ABIE41_RS22420: ABIE41_RS22420 - hypothetical protein, at 4,616,391 to 4,616,621
_RS22420
ABIE41_RS22425: ABIE41_RS22425 - DUF2336 domain-containing protein, at 4,616,765 to 4,617,898
_RS22425
ABIE41_RS22430: ABIE41_RS22430 - DUF1491 family protein, at 4,617,918 to 4,618,253
_RS22430
ABIE41_RS22435: ABIE41_RS22435 - hypothetical protein, at 4,618,285 to 4,618,899
_RS22435
Position (kb) 4616
4617
4618 Strain fitness (log2 ratio) -2
-1
0
1 at 4615.782 kb on - strand, within ABIE41_RS22415 at 4615.787 kb on + strand, within ABIE41_RS22415 at 4615.787 kb on + strand, within ABIE41_RS22415 at 4615.787 kb on + strand, within ABIE41_RS22415 at 4615.788 kb on - strand, within ABIE41_RS22415 at 4615.788 kb on - strand, within ABIE41_RS22415 at 4615.788 kb on - strand, within ABIE41_RS22415 at 4615.788 kb on - strand, within ABIE41_RS22415 at 4616.009 kb on + strand, within ABIE41_RS22415 at 4616.009 kb on + strand, within ABIE41_RS22415 at 4616.010 kb on - strand, within ABIE41_RS22415 at 4616.203 kb on - strand, within ABIE41_RS22415 at 4616.516 kb on - strand, within ABIE41_RS22420 at 4616.711 kb on + strand at 4616.727 kb on - strand at 4617.171 kb on + strand, within ABIE41_RS22425 at 4617.172 kb on - strand, within ABIE41_RS22425 at 4617.912 kb on + strand at 4617.912 kb on + strand at 4617.913 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1 remove 4,615,782 - ABIE41_RS22415 0.25 +0.0 4,615,787 + ABIE41_RS22415 0.26 -0.4 4,615,787 + ABIE41_RS22415 0.26 +1.1 4,615,787 + ABIE41_RS22415 0.26 +1.4 4,615,788 - ABIE41_RS22415 0.26 -1.7 4,615,788 - ABIE41_RS22415 0.26 -2.7 4,615,788 - ABIE41_RS22415 0.26 +0.2 4,615,788 - ABIE41_RS22415 0.26 +0.4 4,616,009 + ABIE41_RS22415 0.54 -1.4 4,616,009 + ABIE41_RS22415 0.54 -1.1 4,616,010 - ABIE41_RS22415 0.55 -0.3 4,616,203 - ABIE41_RS22415 0.80 +1.5 4,616,516 - ABIE41_RS22420 0.54 -1.3 4,616,711 + -1.7 4,616,727 - -0.1 4,617,171 + ABIE41_RS22425 0.36 -0.1 4,617,172 - ABIE41_RS22425 0.36 -0.1 4,617,912 + -0.1 4,617,912 + +1.2 4,617,913 - +0.3
Or see this region's nucleotide sequence