Experiment: Ying_all64 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01985 and ABIE41_RS01990 are separated by 149 nucleotides ABIE41_RS01990 and ABIE41_RS01995 are separated by 38 nucleotides ABIE41_RS01995 and ABIE41_RS02000 are separated by 25 nucleotides ABIE41_RS02000 and ABIE41_RS02005 are separated by 33 nucleotides
ABIE41_RS01985: ABIE41_RS01985 - host attachment protein, at 398,356 to 398,760
_RS01985
ABIE41_RS01990: ABIE41_RS01990 - cytochrome c, at 398,910 to 399,281
_RS01990
ABIE41_RS01995: ABIE41_RS01995 - cytochrome c, at 399,320 to 399,685
_RS01995
ABIE41_RS02000: ABIE41_RS02000 - hypothetical protein, at 399,711 to 400,256
_RS02000
ABIE41_RS02005: ABIE41_RS02005 - hypothetical protein, at 400,290 to 400,523
_RS02005
Position (kb) 399
400 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 398.662 kb on + strand, within ABIE41_RS01985 at 398.663 kb on - strand, within ABIE41_RS01985 at 398.663 kb on - strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.668 kb on - strand, within ABIE41_RS01985 at 398.668 kb on - strand, within ABIE41_RS01985 at 398.668 kb on - strand, within ABIE41_RS01985 at 398.847 kb on + strand at 398.847 kb on + strand at 398.847 kb on + strand at 398.848 kb on - strand at 398.848 kb on - strand at 399.048 kb on + strand, within ABIE41_RS01990 at 399.049 kb on - strand, within ABIE41_RS01990 at 399.049 kb on - strand, within ABIE41_RS01990 at 399.132 kb on + strand, within ABIE41_RS01990 at 399.240 kb on + strand, within ABIE41_RS01990 at 399.240 kb on + strand, within ABIE41_RS01990 at 399.240 kb on + strand, within ABIE41_RS01990 at 399.240 kb on + strand, within ABIE41_RS01990 at 399.240 kb on + strand, within ABIE41_RS01990 at 399.240 kb on + strand, within ABIE41_RS01990 at 399.240 kb on + strand, within ABIE41_RS01990 at 399.241 kb on - strand, within ABIE41_RS01990 at 399.241 kb on - strand, within ABIE41_RS01990 at 399.241 kb on - strand, within ABIE41_RS01990 at 399.241 kb on - strand, within ABIE41_RS01990 at 399.241 kb on - strand, within ABIE41_RS01990 at 399.242 kb on + strand, within ABIE41_RS01990 at 399.242 kb on + strand, within ABIE41_RS01990 at 399.243 kb on - strand, within ABIE41_RS01990 at 399.243 kb on - strand, within ABIE41_RS01990 at 399.659 kb on + strand at 399.659 kb on + strand at 399.659 kb on + strand at 399.660 kb on - strand at 399.970 kb on + strand, within ABIE41_RS02000 at 400.000 kb on + strand, within ABIE41_RS02000 at 400.000 kb on + strand, within ABIE41_RS02000 at 400.001 kb on - strand, within ABIE41_RS02000 at 400.375 kb on + strand, within ABIE41_RS02005 at 400.375 kb on + strand, within ABIE41_RS02005 at 400.376 kb on - strand, within ABIE41_RS02005 at 400.376 kb on - strand, within ABIE41_RS02005 at 400.376 kb on - strand, within ABIE41_RS02005 at 400.523 kb on + strand at 400.523 kb on + strand at 400.523 kb on + strand at 400.523 kb on + strand at 400.524 kb on - strand at 400.524 kb on - strand at 400.524 kb on - strand at 400.524 kb on - strand at 400.524 kb on - strand at 400.642 kb on + strand at 400.642 kb on + strand at 400.643 kb on - strand at 400.643 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1 remove 398,662 + ABIE41_RS01985 0.76 +0.9 398,663 - ABIE41_RS01985 0.76 -0.1 398,663 - ABIE41_RS01985 0.76 -0.4 398,667 + ABIE41_RS01985 0.77 -1.2 398,667 + ABIE41_RS01985 0.77 -0.6 398,667 + ABIE41_RS01985 0.77 +1.0 398,667 + ABIE41_RS01985 0.77 +0.4 398,667 + ABIE41_RS01985 0.77 +0.3 398,667 + ABIE41_RS01985 0.77 +0.0 398,667 + ABIE41_RS01985 0.77 -0.3 398,667 + ABIE41_RS01985 0.77 +0.3 398,667 + ABIE41_RS01985 0.77 -0.2 398,668 - ABIE41_RS01985 0.77 +1.3 398,668 - ABIE41_RS01985 0.77 -0.1 398,668 - ABIE41_RS01985 0.77 -0.3 398,847 + +1.2 398,847 + +0.1 398,847 + -0.1 398,848 - +0.1 398,848 - -1.2 399,048 + ABIE41_RS01990 0.37 +0.3 399,049 - ABIE41_RS01990 0.37 +0.1 399,049 - ABIE41_RS01990 0.37 -1.9 399,132 + ABIE41_RS01990 0.60 -0.2 399,240 + ABIE41_RS01990 0.89 -0.2 399,240 + ABIE41_RS01990 0.89 +0.5 399,240 + ABIE41_RS01990 0.89 -0.4 399,240 + ABIE41_RS01990 0.89 -0.5 399,240 + ABIE41_RS01990 0.89 +0.4 399,240 + ABIE41_RS01990 0.89 -0.3 399,240 + ABIE41_RS01990 0.89 +1.3 399,241 - ABIE41_RS01990 0.89 +0.0 399,241 - ABIE41_RS01990 0.89 +1.3 399,241 - ABIE41_RS01990 0.89 -0.7 399,241 - ABIE41_RS01990 0.89 +0.8 399,241 - ABIE41_RS01990 0.89 -0.6 399,242 + ABIE41_RS01990 0.89 +2.0 399,242 + ABIE41_RS01990 0.89 -0.4 399,243 - ABIE41_RS01990 0.90 -1.7 399,243 - ABIE41_RS01990 0.90 +0.6 399,659 + -1.4 399,659 + +0.5 399,659 + -0.6 399,660 - +0.2 399,970 + ABIE41_RS02000 0.47 -1.0 400,000 + ABIE41_RS02000 0.53 -0.9 400,000 + ABIE41_RS02000 0.53 -2.8 400,001 - ABIE41_RS02000 0.53 -0.2 400,375 + ABIE41_RS02005 0.36 +0.4 400,375 + ABIE41_RS02005 0.36 -0.7 400,376 - ABIE41_RS02005 0.37 +0.4 400,376 - ABIE41_RS02005 0.37 -1.7 400,376 - ABIE41_RS02005 0.37 +0.4 400,523 + -0.3 400,523 + +0.1 400,523 + +0.7 400,523 + +0.3 400,524 - -0.4 400,524 - -0.1 400,524 - +0.0 400,524 - +0.7 400,524 - +0.2 400,642 + +0.2 400,642 + -0.2 400,643 - +0.6 400,643 - -0.8
Or see this region's nucleotide sequence