Strain Fitness in Bosea sp. OAE506 around ABIE41_RS22600

Experiment: Ying_all64 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS22595 and ABIE41_RS22600 are separated by 222 nucleotidesABIE41_RS22600 and ABIE41_RS22605 are separated by 129 nucleotidesABIE41_RS22605 and ABIE41_RS22610 are separated by 49 nucleotides ABIE41_RS22595: ABIE41_RS22595 - chemotaxis protein CheW, at 4,650,109 to 4,652,679 _RS22595 ABIE41_RS22600: ABIE41_RS22600 - DUF1176 domain-containing protein, at 4,652,902 to 4,653,957 _RS22600 ABIE41_RS22605: ABIE41_RS22605 - aldolase, at 4,654,087 to 4,654,881 _RS22605 ABIE41_RS22610: ABIE41_RS22610 - translation initiation factor IF-3, at 4,654,931 to 4,655,473 _RS22610 Position (kb) 4652 4653 4654Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4652.041 kb on + strand, within ABIE41_RS22595at 4652.041 kb on + strand, within ABIE41_RS22595at 4652.042 kb on - strand, within ABIE41_RS22595at 4652.042 kb on - strand, within ABIE41_RS22595at 4652.084 kb on + strand, within ABIE41_RS22595at 4652.084 kb on + strand, within ABIE41_RS22595at 4652.085 kb on - strand, within ABIE41_RS22595at 4652.085 kb on - strand, within ABIE41_RS22595at 4652.085 kb on - strand, within ABIE41_RS22595at 4652.085 kb on - strand, within ABIE41_RS22595at 4652.126 kb on + strand, within ABIE41_RS22595at 4652.126 kb on + strand, within ABIE41_RS22595at 4652.139 kb on - strand, within ABIE41_RS22595at 4652.139 kb on - strand, within ABIE41_RS22595at 4652.255 kb on + strand, within ABIE41_RS22595at 4652.255 kb on + strand, within ABIE41_RS22595at 4652.264 kb on + strand, within ABIE41_RS22595at 4652.265 kb on - strand, within ABIE41_RS22595at 4652.276 kb on + strand, within ABIE41_RS22595at 4652.277 kb on - strand, within ABIE41_RS22595at 4652.277 kb on - strand, within ABIE41_RS22595at 4652.277 kb on - strand, within ABIE41_RS22595at 4652.277 kb on - strand, within ABIE41_RS22595at 4652.682 kb on + strandat 4652.683 kb on - strandat 4653.023 kb on + strand, within ABIE41_RS22600at 4653.023 kb on + strand, within ABIE41_RS22600at 4653.023 kb on + strand, within ABIE41_RS22600at 4653.024 kb on - strand, within ABIE41_RS22600at 4653.024 kb on - strand, within ABIE41_RS22600at 4653.189 kb on - strand, within ABIE41_RS22600at 4653.189 kb on - strand, within ABIE41_RS22600at 4653.189 kb on - strand, within ABIE41_RS22600at 4653.189 kb on - strand, within ABIE41_RS22600at 4653.200 kb on + strand, within ABIE41_RS22600at 4653.200 kb on + strand, within ABIE41_RS22600at 4653.201 kb on - strand, within ABIE41_RS22600at 4653.296 kb on - strand, within ABIE41_RS22600at 4653.297 kb on + strand, within ABIE41_RS22600at 4653.297 kb on + strand, within ABIE41_RS22600at 4653.297 kb on + strand, within ABIE41_RS22600at 4653.371 kb on + strand, within ABIE41_RS22600at 4653.627 kb on - strand, within ABIE41_RS22600at 4653.946 kb on + strandat 4653.946 kb on + strandat 4653.947 kb on - strandat 4653.984 kb on + strandat 4653.985 kb on - strandat 4653.985 kb on - strandat 4654.044 kb on + strandat 4654.044 kb on + strandat 4654.045 kb on - strandat 4654.256 kb on + strand, within ABIE41_RS22605at 4654.256 kb on + strand, within ABIE41_RS22605at 4654.257 kb on - strand, within ABIE41_RS22605at 4654.257 kb on - strand, within ABIE41_RS22605at 4654.257 kb on - strand, within ABIE41_RS22605at 4654.412 kb on + strand, within ABIE41_RS22605at 4654.412 kb on + strand, within ABIE41_RS22605at 4654.412 kb on + strand, within ABIE41_RS22605at 4654.412 kb on + strand, within ABIE41_RS22605at 4654.412 kb on + strand, within ABIE41_RS22605at 4654.413 kb on - strand, within ABIE41_RS22605at 4654.413 kb on - strand, within ABIE41_RS22605at 4654.413 kb on - strand, within ABIE41_RS22605at 4654.413 kb on - strand, within ABIE41_RS22605at 4654.496 kb on + strand, within ABIE41_RS22605at 4654.496 kb on + strand, within ABIE41_RS22605at 4654.497 kb on - strand, within ABIE41_RS22605at 4654.497 kb on - strand, within ABIE41_RS22605at 4654.729 kb on - strand, within ABIE41_RS22605at 4654.729 kb on - strand, within ABIE41_RS22605at 4654.734 kb on + strand, within ABIE41_RS22605at 4654.734 kb on + strand, within ABIE41_RS22605at 4654.734 kb on + strand, within ABIE41_RS22605at 4654.734 kb on + strand, within ABIE41_RS22605at 4654.735 kb on - strand, within ABIE41_RS22605at 4654.933 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
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4,652,041 + ABIE41_RS22595 0.75 +0.1
4,652,041 + ABIE41_RS22595 0.75 -0.5
4,652,042 - ABIE41_RS22595 0.75 -0.4
4,652,042 - ABIE41_RS22595 0.75 +0.7
4,652,084 + ABIE41_RS22595 0.77 +1.1
4,652,084 + ABIE41_RS22595 0.77 +0.6
4,652,085 - ABIE41_RS22595 0.77 -0.6
4,652,085 - ABIE41_RS22595 0.77 -0.5
4,652,085 - ABIE41_RS22595 0.77 +0.4
4,652,085 - ABIE41_RS22595 0.77 +3.3
4,652,126 + ABIE41_RS22595 0.78 -2.5
4,652,126 + ABIE41_RS22595 0.78 +0.8
4,652,139 - ABIE41_RS22595 0.79 -0.4
4,652,139 - ABIE41_RS22595 0.79 -0.1
4,652,255 + ABIE41_RS22595 0.83 -0.3
4,652,255 + ABIE41_RS22595 0.83 -0.0
4,652,264 + ABIE41_RS22595 0.84 +1.1
4,652,265 - ABIE41_RS22595 0.84 +0.1
4,652,276 + ABIE41_RS22595 0.84 +0.2
4,652,277 - ABIE41_RS22595 0.84 -0.8
4,652,277 - ABIE41_RS22595 0.84 +0.2
4,652,277 - ABIE41_RS22595 0.84 -0.1
4,652,277 - ABIE41_RS22595 0.84 +0.4
4,652,682 + +0.1
4,652,683 - +1.0
4,653,023 + ABIE41_RS22600 0.11 +1.4
4,653,023 + ABIE41_RS22600 0.11 +0.6
4,653,023 + ABIE41_RS22600 0.11 -0.3
4,653,024 - ABIE41_RS22600 0.12 +0.5
4,653,024 - ABIE41_RS22600 0.12 +0.0
4,653,189 - ABIE41_RS22600 0.27 -0.1
4,653,189 - ABIE41_RS22600 0.27 -0.3
4,653,189 - ABIE41_RS22600 0.27 -0.8
4,653,189 - ABIE41_RS22600 0.27 +0.0
4,653,200 + ABIE41_RS22600 0.28 +2.3
4,653,200 + ABIE41_RS22600 0.28 +0.7
4,653,201 - ABIE41_RS22600 0.28 +0.5
4,653,296 - ABIE41_RS22600 0.37 +0.7
4,653,297 + ABIE41_RS22600 0.37 +1.3
4,653,297 + ABIE41_RS22600 0.37 +1.5
4,653,297 + ABIE41_RS22600 0.37 -0.4
4,653,371 + ABIE41_RS22600 0.44 -0.3
4,653,627 - ABIE41_RS22600 0.69 +1.3
4,653,946 + -0.6
4,653,946 + -2.7
4,653,947 - +0.4
4,653,984 + -1.7
4,653,985 - +0.4
4,653,985 - -0.2
4,654,044 + -0.2
4,654,044 + +1.6
4,654,045 - -0.2
4,654,256 + ABIE41_RS22605 0.21 -0.6
4,654,256 + ABIE41_RS22605 0.21 +0.7
4,654,257 - ABIE41_RS22605 0.21 +1.2
4,654,257 - ABIE41_RS22605 0.21 -1.4
4,654,257 - ABIE41_RS22605 0.21 -0.4
4,654,412 + ABIE41_RS22605 0.41 -0.1
4,654,412 + ABIE41_RS22605 0.41 +0.5
4,654,412 + ABIE41_RS22605 0.41 -0.5
4,654,412 + ABIE41_RS22605 0.41 +0.2
4,654,412 + ABIE41_RS22605 0.41 +0.6
4,654,413 - ABIE41_RS22605 0.41 -0.0
4,654,413 - ABIE41_RS22605 0.41 -0.2
4,654,413 - ABIE41_RS22605 0.41 +0.5
4,654,413 - ABIE41_RS22605 0.41 -0.0
4,654,496 + ABIE41_RS22605 0.51 +0.1
4,654,496 + ABIE41_RS22605 0.51 +0.2
4,654,497 - ABIE41_RS22605 0.52 +0.7
4,654,497 - ABIE41_RS22605 0.52 -1.1
4,654,729 - ABIE41_RS22605 0.81 -1.2
4,654,729 - ABIE41_RS22605 0.81 -0.3
4,654,734 + ABIE41_RS22605 0.81 -0.4
4,654,734 + ABIE41_RS22605 0.81 +0.2
4,654,734 + ABIE41_RS22605 0.81 +0.5
4,654,734 + ABIE41_RS22605 0.81 +0.1
4,654,735 - ABIE41_RS22605 0.82 +0.0
4,654,933 - +0.4

Or see this region's nucleotide sequence