Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21930 and ABIE41_RS21935 are separated by 42 nucleotides ABIE41_RS21935 and ABIE41_RS21940 are separated by 1 nucleotides ABIE41_RS21940 and ABIE41_RS21945 are separated by 61 nucleotides ABIE41_RS21945 and ABIE41_RS21950 are separated by 87 nucleotides
ABIE41_RS21930: ABIE41_RS21930 - creatininase family protein, at 4,508,564 to 4,509,367
_RS21930
ABIE41_RS21935: ABIE41_RS21935 - helix-turn-helix domain-containing protein, at 4,509,410 to 4,509,700
_RS21935
ABIE41_RS21940: ABIE41_RS21940 - type II toxin-antitoxin system RelE/ParE family toxin, at 4,509,702 to 4,510,058
_RS21940
ABIE41_RS21945: ABIE41_RS21945 - malonyl-CoA synthase, at 4,510,120 to 4,511,667
_RS21945
ABIE41_RS21950: ABIE41_RS21950 - malonyl-CoA decarboxylase, at 4,511,755 to 4,513,083
_RS21950
Position (kb) 4510
4511
4512 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4509.148 kb on + strand, within ABIE41_RS21930 at 4509.164 kb on + strand, within ABIE41_RS21930 at 4509.165 kb on - strand, within ABIE41_RS21930 at 4509.350 kb on + strand at 4509.350 kb on + strand at 4509.350 kb on + strand at 4509.350 kb on + strand at 4509.350 kb on + strand at 4509.350 kb on + strand at 4509.350 kb on + strand at 4509.351 kb on - strand at 4509.351 kb on - strand at 4509.351 kb on - strand at 4509.408 kb on + strand at 4509.408 kb on + strand at 4509.409 kb on - strand at 4509.409 kb on - strand at 4509.856 kb on + strand, within ABIE41_RS21940 at 4509.857 kb on - strand, within ABIE41_RS21940 at 4509.857 kb on - strand, within ABIE41_RS21940 at 4510.104 kb on + strand at 4510.148 kb on + strand at 4510.148 kb on + strand at 4510.148 kb on + strand at 4510.148 kb on + strand at 4510.148 kb on + strand at 4510.148 kb on + strand at 4510.149 kb on - strand at 4510.149 kb on - strand at 4510.149 kb on - strand at 4510.149 kb on - strand at 4510.149 kb on - strand at 4510.149 kb on - strand at 4510.149 kb on - strand at 4510.160 kb on + strand at 4510.161 kb on - strand at 4510.161 kb on - strand at 4510.433 kb on + strand, within ABIE41_RS21945 at 4510.434 kb on - strand, within ABIE41_RS21945 at 4510.434 kb on - strand, within ABIE41_RS21945 at 4510.434 kb on - strand, within ABIE41_RS21945 at 4510.481 kb on + strand, within ABIE41_RS21945 at 4510.571 kb on + strand, within ABIE41_RS21945 at 4510.716 kb on - strand, within ABIE41_RS21945 at 4510.716 kb on - strand, within ABIE41_RS21945 at 4510.845 kb on + strand, within ABIE41_RS21945 at 4510.845 kb on + strand, within ABIE41_RS21945 at 4510.846 kb on - strand, within ABIE41_RS21945 at 4510.846 kb on - strand, within ABIE41_RS21945 at 4510.846 kb on - strand, within ABIE41_RS21945 at 4510.846 kb on - strand, within ABIE41_RS21945 at 4510.846 kb on - strand, within ABIE41_RS21945 at 4510.895 kb on + strand, within ABIE41_RS21945 at 4510.895 kb on + strand, within ABIE41_RS21945 at 4510.895 kb on + strand, within ABIE41_RS21945 at 4510.895 kb on + strand, within ABIE41_RS21945 at 4510.895 kb on + strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4511.085 kb on - strand, within ABIE41_RS21945 at 4511.085 kb on - strand, within ABIE41_RS21945 at 4511.085 kb on - strand, within ABIE41_RS21945 at 4511.085 kb on - strand, within ABIE41_RS21945 at 4511.168 kb on + strand, within ABIE41_RS21945 at 4511.169 kb on - strand, within ABIE41_RS21945 at 4511.169 kb on - strand, within ABIE41_RS21945 at 4511.169 kb on - strand, within ABIE41_RS21945 at 4511.406 kb on + strand, within ABIE41_RS21945 at 4511.406 kb on + strand, within ABIE41_RS21945 at 4511.406 kb on + strand, within ABIE41_RS21945 at 4511.407 kb on - strand, within ABIE41_RS21945 at 4511.407 kb on - strand, within ABIE41_RS21945 at 4511.407 kb on - strand, within ABIE41_RS21945 at 4511.408 kb on + strand, within ABIE41_RS21945 at 4511.459 kb on + strand, within ABIE41_RS21945 at 4511.459 kb on - strand, within ABIE41_RS21945 at 4511.576 kb on + strand at 4511.577 kb on - strand at 4511.577 kb on - strand at 4511.577 kb on - strand at 4511.582 kb on + strand at 4511.583 kb on - strand at 4511.688 kb on + strand at 4511.688 kb on + strand at 4511.689 kb on - strand at 4511.859 kb on - strand at 4511.864 kb on + strand at 4511.864 kb on + strand at 4511.864 kb on + strand at 4512.014 kb on + strand, within ABIE41_RS21950 at 4512.014 kb on + strand, within ABIE41_RS21950 at 4512.014 kb on + strand, within ABIE41_RS21950 at 4512.014 kb on + strand, within ABIE41_RS21950 at 4512.014 kb on + strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.527 kb on + strand, within ABIE41_RS21950
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 4,509,148 + ABIE41_RS21930 0.73 +1.0 4,509,164 + ABIE41_RS21930 0.75 +0.3 4,509,165 - ABIE41_RS21930 0.75 -0.1 4,509,350 + +0.6 4,509,350 + +1.0 4,509,350 + +2.6 4,509,350 + -0.0 4,509,350 + +1.6 4,509,350 + -0.1 4,509,350 + +0.1 4,509,351 - +0.2 4,509,351 - -0.5 4,509,351 - -0.1 4,509,408 + +0.1 4,509,408 + +1.0 4,509,409 - -1.6 4,509,409 - -1.3 4,509,856 + ABIE41_RS21940 0.43 -0.6 4,509,857 - ABIE41_RS21940 0.43 +0.3 4,509,857 - ABIE41_RS21940 0.43 -0.1 4,510,104 + -0.1 4,510,148 + +0.1 4,510,148 + +0.7 4,510,148 + +0.0 4,510,148 + +0.6 4,510,148 + +0.8 4,510,148 + +0.2 4,510,149 - +0.7 4,510,149 - -0.2 4,510,149 - +1.2 4,510,149 - +0.8 4,510,149 - -0.6 4,510,149 - -0.1 4,510,149 - +0.2 4,510,160 + +0.2 4,510,161 - -0.1 4,510,161 - +0.4 4,510,433 + ABIE41_RS21945 0.20 +0.2 4,510,434 - ABIE41_RS21945 0.20 +0.0 4,510,434 - ABIE41_RS21945 0.20 +0.6 4,510,434 - ABIE41_RS21945 0.20 -2.3 4,510,481 + ABIE41_RS21945 0.23 -1.2 4,510,571 + ABIE41_RS21945 0.29 +0.4 4,510,716 - ABIE41_RS21945 0.39 -0.6 4,510,716 - ABIE41_RS21945 0.39 -0.6 4,510,845 + ABIE41_RS21945 0.47 -0.2 4,510,845 + ABIE41_RS21945 0.47 +0.2 4,510,846 - ABIE41_RS21945 0.47 +0.1 4,510,846 - ABIE41_RS21945 0.47 +0.1 4,510,846 - ABIE41_RS21945 0.47 -0.0 4,510,846 - ABIE41_RS21945 0.47 +0.4 4,510,846 - ABIE41_RS21945 0.47 -0.8 4,510,895 + ABIE41_RS21945 0.50 +0.2 4,510,895 + ABIE41_RS21945 0.50 -0.7 4,510,895 + ABIE41_RS21945 0.50 +0.4 4,510,895 + ABIE41_RS21945 0.50 +0.4 4,510,895 + ABIE41_RS21945 0.50 -0.6 4,510,896 - ABIE41_RS21945 0.50 -1.6 4,510,896 - ABIE41_RS21945 0.50 +0.5 4,510,896 - ABIE41_RS21945 0.50 -0.0 4,510,896 - ABIE41_RS21945 0.50 +0.7 4,510,896 - ABIE41_RS21945 0.50 -0.3 4,510,896 - ABIE41_RS21945 0.50 -0.4 4,510,896 - ABIE41_RS21945 0.50 +0.1 4,511,085 - ABIE41_RS21945 0.62 +0.7 4,511,085 - ABIE41_RS21945 0.62 -0.6 4,511,085 - ABIE41_RS21945 0.62 -0.2 4,511,085 - ABIE41_RS21945 0.62 -0.1 4,511,168 + ABIE41_RS21945 0.68 -1.9 4,511,169 - ABIE41_RS21945 0.68 +0.8 4,511,169 - ABIE41_RS21945 0.68 +1.1 4,511,169 - ABIE41_RS21945 0.68 -1.0 4,511,406 + ABIE41_RS21945 0.83 -0.3 4,511,406 + ABIE41_RS21945 0.83 -0.8 4,511,406 + ABIE41_RS21945 0.83 -0.1 4,511,407 - ABIE41_RS21945 0.83 +1.6 4,511,407 - ABIE41_RS21945 0.83 +0.8 4,511,407 - ABIE41_RS21945 0.83 -0.1 4,511,408 + ABIE41_RS21945 0.83 -1.0 4,511,459 + ABIE41_RS21945 0.86 -0.4 4,511,459 - ABIE41_RS21945 0.86 +0.4 4,511,576 + +1.6 4,511,577 - -0.5 4,511,577 - +0.4 4,511,577 - -0.4 4,511,582 + -1.0 4,511,583 - +1.7 4,511,688 + +0.4 4,511,688 + +1.0 4,511,689 - +0.7 4,511,859 - +1.7 4,511,864 + -0.6 4,511,864 + +0.3 4,511,864 + +0.3 4,512,014 + ABIE41_RS21950 0.19 -0.2 4,512,014 + ABIE41_RS21950 0.19 +0.4 4,512,014 + ABIE41_RS21950 0.19 -0.0 4,512,014 + ABIE41_RS21950 0.19 -1.1 4,512,014 + ABIE41_RS21950 0.19 -0.5 4,512,015 - ABIE41_RS21950 0.20 -0.3 4,512,015 - ABIE41_RS21950 0.20 -0.4 4,512,015 - ABIE41_RS21950 0.20 -0.3 4,512,015 - ABIE41_RS21950 0.20 -1.0 4,512,015 - ABIE41_RS21950 0.20 +0.2 4,512,015 - ABIE41_RS21950 0.20 +1.3 4,512,015 - ABIE41_RS21950 0.20 -0.6 4,512,015 - ABIE41_RS21950 0.20 -0.3 4,512,015 - ABIE41_RS21950 0.20 -0.3 4,512,015 - ABIE41_RS21950 0.20 +0.0 4,512,015 - ABIE41_RS21950 0.20 -0.2 4,512,015 - ABIE41_RS21950 0.20 +0.2 4,512,015 - ABIE41_RS21950 0.20 +0.2 4,512,015 - ABIE41_RS21950 0.20 +0.3 4,512,015 - ABIE41_RS21950 0.20 +0.8 4,512,308 + ABIE41_RS21950 0.42 +0.7 4,512,308 + ABIE41_RS21950 0.42 +1.2 4,512,308 + ABIE41_RS21950 0.42 -0.9 4,512,308 + ABIE41_RS21950 0.42 -0.6 4,512,308 + ABIE41_RS21950 0.42 -1.1 4,512,308 + ABIE41_RS21950 0.42 -0.2 4,512,308 + ABIE41_RS21950 0.42 +1.2 4,512,308 + ABIE41_RS21950 0.42 -0.8 4,512,309 - ABIE41_RS21950 0.42 +0.1 4,512,309 - ABIE41_RS21950 0.42 -0.4 4,512,309 - ABIE41_RS21950 0.42 -0.1 4,512,309 - ABIE41_RS21950 0.42 -1.2 4,512,309 - ABIE41_RS21950 0.42 -0.3 4,512,527 + ABIE41_RS21950 0.58 -1.0
Or see this region's nucleotide sequence