Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20335

Experiment: Ying_all64 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS20325 and ABIE41_RS20330 are separated by 39 nucleotidesABIE41_RS20330 and ABIE41_RS20335 are separated by 43 nucleotidesABIE41_RS20335 and ABIE41_RS20340 are separated by 254 nucleotides ABIE41_RS20325: ABIE41_RS20325 - patatin-like phospholipase family protein, at 4,175,516 to 4,176,685 _RS20325 ABIE41_RS20330: ABIE41_RS20330 - hypothetical protein, at 4,176,725 to 4,177,360 _RS20330 ABIE41_RS20335: ABIE41_RS20335 - tetratricopeptide repeat protein, at 4,177,404 to 4,178,720 _RS20335 ABIE41_RS20340: ABIE41_RS20340 - AraC family transcriptional regulator, at 4,178,975 to 4,179,883 _RS20340 Position (kb) 4177 4178 4179Strain fitness (log2 ratio) -2 -1 0 1at 4176.586 kb on - strandat 4176.586 kb on - strandat 4176.601 kb on - strandat 4176.783 kb on + strandat 4176.808 kb on + strand, within ABIE41_RS20330at 4176.809 kb on - strand, within ABIE41_RS20330at 4176.809 kb on - strand, within ABIE41_RS20330at 4176.809 kb on - strand, within ABIE41_RS20330at 4176.809 kb on - strand, within ABIE41_RS20330at 4176.809 kb on - strand, within ABIE41_RS20330at 4176.810 kb on + strand, within ABIE41_RS20330at 4176.810 kb on + strand, within ABIE41_RS20330at 4176.810 kb on + strand, within ABIE41_RS20330at 4176.810 kb on + strand, within ABIE41_RS20330at 4176.810 kb on + strand, within ABIE41_RS20330at 4176.810 kb on + strand, within ABIE41_RS20330at 4176.811 kb on - strand, within ABIE41_RS20330at 4176.811 kb on - strand, within ABIE41_RS20330at 4176.811 kb on - strand, within ABIE41_RS20330at 4176.811 kb on - strand, within ABIE41_RS20330at 4176.811 kb on - strand, within ABIE41_RS20330at 4176.840 kb on + strand, within ABIE41_RS20330at 4176.840 kb on + strand, within ABIE41_RS20330at 4176.840 kb on + strand, within ABIE41_RS20330at 4176.840 kb on + strand, within ABIE41_RS20330at 4176.841 kb on - strand, within ABIE41_RS20330at 4176.841 kb on - strand, within ABIE41_RS20330at 4177.104 kb on + strand, within ABIE41_RS20330at 4177.105 kb on - strand, within ABIE41_RS20330at 4177.105 kb on - strand, within ABIE41_RS20330at 4177.105 kb on - strand, within ABIE41_RS20330at 4177.105 kb on - strand, within ABIE41_RS20330at 4177.105 kb on - strand, within ABIE41_RS20330at 4177.161 kb on + strand, within ABIE41_RS20330at 4177.162 kb on - strand, within ABIE41_RS20330at 4177.464 kb on + strandat 4177.465 kb on - strandat 4177.507 kb on + strandat 4177.948 kb on + strand, within ABIE41_RS20335at 4177.948 kb on + strand, within ABIE41_RS20335at 4177.949 kb on - strand, within ABIE41_RS20335at 4177.949 kb on - strand, within ABIE41_RS20335at 4177.949 kb on - strand, within ABIE41_RS20335at 4178.230 kb on + strand, within ABIE41_RS20335at 4178.231 kb on - strand, within ABIE41_RS20335at 4178.231 kb on - strand, within ABIE41_RS20335at 4178.231 kb on - strand, within ABIE41_RS20335at 4178.236 kb on + strand, within ABIE41_RS20335at 4178.365 kb on + strand, within ABIE41_RS20335at 4179.032 kb on + strandat 4179.032 kb on + strandat 4179.032 kb on + strandat 4179.032 kb on + strandat 4179.032 kb on + strandat 4179.032 kb on + strandat 4179.033 kb on - strandat 4179.033 kb on - strandat 4179.048 kb on - strandat 4179.396 kb on - strand, within ABIE41_RS20340at 4179.406 kb on + strand, within ABIE41_RS20340at 4179.406 kb on + strand, within ABIE41_RS20340at 4179.407 kb on - strand, within ABIE41_RS20340at 4179.407 kb on - strand, within ABIE41_RS20340at 4179.407 kb on - strand, within ABIE41_RS20340at 4179.407 kb on - strand, within ABIE41_RS20340at 4179.407 kb on - strand, within ABIE41_RS20340at 4179.551 kb on + strand, within ABIE41_RS20340at 4179.552 kb on - strand, within ABIE41_RS20340at 4179.584 kb on + strand, within ABIE41_RS20340at 4179.585 kb on - strand, within ABIE41_RS20340at 4179.704 kb on + strand, within ABIE41_RS20340at 4179.704 kb on + strand, within ABIE41_RS20340at 4179.705 kb on - strand, within ABIE41_RS20340at 4179.705 kb on - strand, within ABIE41_RS20340at 4179.705 kb on - strand, within ABIE41_RS20340at 4179.705 kb on - strand, within ABIE41_RS20340

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
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4,176,586 - +0.9
4,176,586 - -1.0
4,176,601 - +0.3
4,176,783 + -0.8
4,176,808 + ABIE41_RS20330 0.13 +0.2
4,176,809 - ABIE41_RS20330 0.13 -1.4
4,176,809 - ABIE41_RS20330 0.13 -1.6
4,176,809 - ABIE41_RS20330 0.13 -0.2
4,176,809 - ABIE41_RS20330 0.13 -1.3
4,176,809 - ABIE41_RS20330 0.13 +0.5
4,176,810 + ABIE41_RS20330 0.13 -0.2
4,176,810 + ABIE41_RS20330 0.13 +0.4
4,176,810 + ABIE41_RS20330 0.13 +1.0
4,176,810 + ABIE41_RS20330 0.13 -1.5
4,176,810 + ABIE41_RS20330 0.13 -0.3
4,176,810 + ABIE41_RS20330 0.13 -0.6
4,176,811 - ABIE41_RS20330 0.14 -0.0
4,176,811 - ABIE41_RS20330 0.14 -0.3
4,176,811 - ABIE41_RS20330 0.14 -1.8
4,176,811 - ABIE41_RS20330 0.14 -0.4
4,176,811 - ABIE41_RS20330 0.14 +0.3
4,176,840 + ABIE41_RS20330 0.18 +0.1
4,176,840 + ABIE41_RS20330 0.18 -0.4
4,176,840 + ABIE41_RS20330 0.18 -1.2
4,176,840 + ABIE41_RS20330 0.18 -0.2
4,176,841 - ABIE41_RS20330 0.18 +0.0
4,176,841 - ABIE41_RS20330 0.18 -0.4
4,177,104 + ABIE41_RS20330 0.60 +1.2
4,177,105 - ABIE41_RS20330 0.60 -0.8
4,177,105 - ABIE41_RS20330 0.60 -0.3
4,177,105 - ABIE41_RS20330 0.60 -0.1
4,177,105 - ABIE41_RS20330 0.60 -0.2
4,177,105 - ABIE41_RS20330 0.60 +0.3
4,177,161 + ABIE41_RS20330 0.69 +0.1
4,177,162 - ABIE41_RS20330 0.69 -1.0
4,177,464 + +0.0
4,177,465 - -1.2
4,177,507 + -0.2
4,177,948 + ABIE41_RS20335 0.41 -1.2
4,177,948 + ABIE41_RS20335 0.41 -1.5
4,177,949 - ABIE41_RS20335 0.41 -0.1
4,177,949 - ABIE41_RS20335 0.41 -0.8
4,177,949 - ABIE41_RS20335 0.41 -0.3
4,178,230 + ABIE41_RS20335 0.63 +0.7
4,178,231 - ABIE41_RS20335 0.63 +0.7
4,178,231 - ABIE41_RS20335 0.63 -1.2
4,178,231 - ABIE41_RS20335 0.63 -0.4
4,178,236 + ABIE41_RS20335 0.63 +0.5
4,178,365 + ABIE41_RS20335 0.73 +0.3
4,179,032 + +0.7
4,179,032 + -0.8
4,179,032 + -0.2
4,179,032 + +0.2
4,179,032 + -0.4
4,179,032 + +0.1
4,179,033 - +1.0
4,179,033 - -0.2
4,179,048 - -0.0
4,179,396 - ABIE41_RS20340 0.46 +0.0
4,179,406 + ABIE41_RS20340 0.47 +1.0
4,179,406 + ABIE41_RS20340 0.47 -0.8
4,179,407 - ABIE41_RS20340 0.48 -0.3
4,179,407 - ABIE41_RS20340 0.48 -0.4
4,179,407 - ABIE41_RS20340 0.48 -0.6
4,179,407 - ABIE41_RS20340 0.48 -0.9
4,179,407 - ABIE41_RS20340 0.48 +0.2
4,179,551 + ABIE41_RS20340 0.63 -0.6
4,179,552 - ABIE41_RS20340 0.63 -1.2
4,179,584 + ABIE41_RS20340 0.67 -0.7
4,179,585 - ABIE41_RS20340 0.67 -0.6
4,179,704 + ABIE41_RS20340 0.80 -0.1
4,179,704 + ABIE41_RS20340 0.80 +0.2
4,179,705 - ABIE41_RS20340 0.80 -0.4
4,179,705 - ABIE41_RS20340 0.80 -0.2
4,179,705 - ABIE41_RS20340 0.80 +0.2
4,179,705 - ABIE41_RS20340 0.80 -1.1

Or see this region's nucleotide sequence