Strain Fitness in Bosea sp. OAE506 around ABIE41_RS19445

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
4,004,245	-		ABIE41_RS19430	0.75	+1.7
4,004,264	+		ABIE41_RS19430	0.80	+1.6
4,004,265	-		ABIE41_RS19430	0.80	+1.4
4,004,265	-		ABIE41_RS19430	0.80	+1.6
4,004,265	-		ABIE41_RS19430	0.80	+2.6
4,004,378	+				+1.3
4,004,716	+				+1.3
4,004,716	+				+1.2
4,004,716	+				+0.9
4,004,717	-				+1.2
4,004,717	-				+2.5
4,004,717	-				+1.1
4,004,739	+				+1.7
4,004,739	+				+1.5
4,004,739	+				+1.0
4,004,828	+				+3.2
4,004,828	+				+1.5
4,004,828	+				+1.0
4,004,828	+				+1.3
4,004,828	+				+1.4
4,004,829	-				+1.8
4,004,829	-				+0.3
4,004,829	-				+1.4
4,005,013	+		ABIE41_RS19440	0.40	+0.8
4,005,013	+		ABIE41_RS19440	0.40	+1.1
4,005,014	-		ABIE41_RS19440	0.40	+4.3
4,005,016	+		ABIE41_RS19440	0.41	+2.0
4,005,047	+		ABIE41_RS19440	0.49	+1.3
4,005,047	+		ABIE41_RS19440	0.49	+2.3
4,005,048	-		ABIE41_RS19440	0.50	+1.1
4,005,061	+		ABIE41_RS19440	0.53	+1.6
4,005,066	+		ABIE41_RS19440	0.55	+2.0
4,005,067	-		ABIE41_RS19440	0.55	+1.4
4,005,126	+		ABIE41_RS19440	0.72	+1.5
4,005,175	+		ABIE41_RS19440	0.86	+1.4
4,005,175	+		ABIE41_RS19440	0.86	+0.9
4,005,175	+		ABIE41_RS19440	0.86	+2.0
4,005,175	+		ABIE41_RS19440	0.86	+0.7
4,005,175	+		ABIE41_RS19440	0.86	+1.2
4,005,175	+		ABIE41_RS19440	0.86	+1.2
4,005,175	+		ABIE41_RS19440	0.86	+2.2
4,005,175	+		ABIE41_RS19440	0.86	-1.5
4,005,175	+		ABIE41_RS19440	0.86	+0.5
4,005,175	+		ABIE41_RS19440	0.86	+1.7
4,005,175	+		ABIE41_RS19440	0.86	+0.3
4,005,175	+		ABIE41_RS19440	0.86	+0.7
4,005,176	-		ABIE41_RS19440	0.86	+2.0
4,005,176	-		ABIE41_RS19440	0.86	+1.7
4,005,176	-		ABIE41_RS19440	0.86	+1.5
4,005,176	-		ABIE41_RS19440	0.86	+1.5
4,005,176	-		ABIE41_RS19440	0.86	+0.4
4,005,176	-		ABIE41_RS19440	0.86	+1.6
4,005,176	-		ABIE41_RS19440	0.86	+1.3
4,005,176	-		ABIE41_RS19440	0.86	+1.3
4,005,176	-		ABIE41_RS19440	0.86	+1.8
4,005,176	-		ABIE41_RS19440	0.86	+1.7
4,005,176	-		ABIE41_RS19440	0.86	+1.4
4,005,176	-		ABIE41_RS19440	0.86	+1.3
4,005,176	-		ABIE41_RS19440	0.86	+1.3
4,005,176	-		ABIE41_RS19440	0.86	+1.1
4,005,176	-		ABIE41_RS19440	0.86	+2.2
4,005,902	+		ABIE41_RS19445	0.33	+0.3
4,005,902	+		ABIE41_RS19445	0.33	+0.2
4,005,902	+		ABIE41_RS19445	0.33	+1.7
4,005,903	-		ABIE41_RS19445	0.33	+0.7
4,005,903	-		ABIE41_RS19445	0.33	+0.2
4,006,655	+		ABIE41_RS19445	0.70	-1.4
4,006,655	+		ABIE41_RS19445	0.70	+0.8
4,006,655	+		ABIE41_RS19445	0.70	+0.4
4,006,656	-		ABIE41_RS19445	0.70	+0.3
4,006,656	-		ABIE41_RS19445	0.70	+0.2
4,006,656	-		ABIE41_RS19445	0.70	-1.9
4,006,679	+		ABIE41_RS19445	0.71	+0.1
4,006,680	-		ABIE41_RS19445	0.71	-0.0
4,006,773	+		ABIE41_RS19445	0.76	+0.6
4,006,773	+		ABIE41_RS19445	0.76	+1.4
4,006,774	-		ABIE41_RS19445	0.76	-1.0
4,006,774	-		ABIE41_RS19445	0.76	+0.1
4,007,093	+				+0.5
4,007,093	+				+0.4
4,007,094	-				+0.3
4,007,094	-				+0.4
4,007,267	+				-0.2
4,007,267	+				+0.4
4,007,268	-				+0.9
4,007,268	-				+4.3
4,007,268	-				+0.5
4,007,268	-				+1.4
4,007,273	+				+0.6
4,007,273	+				-0.4
4,007,273	+				-0.1
4,007,333	-				-0.5
4,007,418	+		ABIE41_RS19450	0.24	+0.6
4,007,418	+		ABIE41_RS19450	0.24	+0.6
4,007,515	+		ABIE41_RS19450	0.50	-0.3
4,007,515	+		ABIE41_RS19450	0.50	+0.7
4,007,515	+		ABIE41_RS19450	0.50	+1.0
4,007,516	-		ABIE41_RS19450	0.50	+0.4
4,007,516	-		ABIE41_RS19450	0.50	+0.0
4,007,516	-		ABIE41_RS19450	0.50	+0.3
4,007,516	-		ABIE41_RS19450	0.50	+0.2
4,007,516	-		ABIE41_RS19450	0.50	+0.0
4,007,516	-		ABIE41_RS19450	0.50	-1.6
4,007,546	+		ABIE41_RS19450	0.58	-0.9
4,007,546	+		ABIE41_RS19450	0.58	-0.1
4,007,546	+		ABIE41_RS19450	0.58	+1.1
4,007,546	+		ABIE41_RS19450	0.58	+1.3
4,007,546	+		ABIE41_RS19450	0.58	+0.1
4,007,547	-		ABIE41_RS19450	0.59	-1.1
4,007,547	-		ABIE41_RS19450	0.59	-1.6
4,007,547	-		ABIE41_RS19450	0.59	-0.2
4,007,548	+		ABIE41_RS19450	0.59	+1.2
4,007,548	+		ABIE41_RS19450	0.59	-0.3
4,007,548	+		ABIE41_RS19450	0.59	+0.6
4,007,548	+		ABIE41_RS19450	0.59	-0.3
4,007,548	+		ABIE41_RS19450	0.59	+0.6
4,007,548	+		ABIE41_RS19450	0.59	+0.7
4,007,548	+		ABIE41_RS19450	0.59	-0.3
4,007,548	+		ABIE41_RS19450	0.59	-0.1
4,007,549	-		ABIE41_RS19450	0.59	+0.9
4,007,549	-		ABIE41_RS19450	0.59	+0.3
4,007,549	-		ABIE41_RS19450	0.59	+0.3
4,007,549	-		ABIE41_RS19450	0.59	-0.2
4,007,549	-		ABIE41_RS19450	0.59	+0.2
4,007,549	-		ABIE41_RS19450	0.59	-2.9
4,007,716	-				-0.9
4,007,797	+		ABIE41_RS19455	0.27	+1.0
4,007,800	-		ABIE41_RS19455	0.27	+1.5
4,007,800	-		ABIE41_RS19455	0.27	+0.4
4,007,800	-		ABIE41_RS19455	0.27	+0.3
4,007,800	-		ABIE41_RS19455	0.27	+0.3
4,007,939	+		ABIE41_RS19455	0.64	+0.6
4,008,066	+				+0.5
4,008,067	-				+0.5
4,008,166	-				+1.5
4,008,174	+				+0.7
4,008,174	+				+1.3
4,008,175	-				+1.9