Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16405

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
3,372,449	+		ABIE41_RS16395	0.69	-0.0
3,372,450	-		ABIE41_RS16395	0.69	-0.3
3,372,461	+		ABIE41_RS16395	0.70	+0.2
3,372,461	+		ABIE41_RS16395	0.70	-0.4
3,372,692	+		ABIE41_RS16395	0.88	-0.8
3,372,693	-		ABIE41_RS16395	0.88	-0.8
3,372,961	+		ABIE41_RS16400	0.19	+0.1
3,372,961	+		ABIE41_RS16400	0.19	+0.2
3,372,962	-		ABIE41_RS16400	0.20	-0.5
3,372,962	-		ABIE41_RS16400	0.20	+1.7
3,372,962	-		ABIE41_RS16400	0.20	-0.3
3,372,962	-		ABIE41_RS16400	0.20	+0.1
3,373,156	+		ABIE41_RS16400	0.57	+0.8
3,373,156	+		ABIE41_RS16400	0.57	+0.7
3,373,700	+		ABIE41_RS16405	0.26	+0.1
3,373,700	+		ABIE41_RS16405	0.26	-0.3
3,373,700	+		ABIE41_RS16405	0.26	+0.6
3,373,701	-		ABIE41_RS16405	0.26	-1.3
3,373,701	-		ABIE41_RS16405	0.26	-0.2
3,374,083	+		ABIE41_RS16405	0.65	-0.3
3,374,083	+		ABIE41_RS16405	0.65	-0.3
3,374,084	-		ABIE41_RS16405	0.65	+0.5
3,374,084	-		ABIE41_RS16405	0.65	+0.4
3,374,089	+		ABIE41_RS16405	0.65	+1.1
3,374,089	+		ABIE41_RS16405	0.65	+0.5
3,374,090	-		ABIE41_RS16405	0.65	+0.2
3,374,094	-		ABIE41_RS16405	0.66	+0.5
3,374,094	-		ABIE41_RS16405	0.66	-0.2
3,374,094	-		ABIE41_RS16405	0.66	+0.5
3,374,094	-		ABIE41_RS16405	0.66	-0.2
3,374,113	+		ABIE41_RS16405	0.68	+0.6
3,374,114	-		ABIE41_RS16405	0.68	+0.3
3,374,114	-		ABIE41_RS16405	0.68	-0.1
3,374,114	-		ABIE41_RS16405	0.68	-0.1
3,374,534	+				-0.1
3,374,534	+				-0.7
3,374,535	-				-0.2
3,374,535	-				-0.2
3,374,535	-				-0.3
3,374,586	-				+0.3
3,374,599	+				-0.3
3,374,599	+				+0.5
3,374,683	+		ABIE41_RS16410	0.12	-0.5
3,374,683	+		ABIE41_RS16410	0.12	+0.0
3,374,684	-		ABIE41_RS16410	0.12	+0.0
3,374,684	-		ABIE41_RS16410	0.12	-0.3
3,374,684	-		ABIE41_RS16410	0.12	+1.9
3,374,896	+		ABIE41_RS16410	0.28	+0.5
3,374,938	+		ABIE41_RS16410	0.31	-1.2
3,374,939	-		ABIE41_RS16410	0.31	+0.2
3,374,963	-		ABIE41_RS16410	0.33	+0.3
3,374,963	-		ABIE41_RS16410	0.33	-0.4
3,374,989	+		ABIE41_RS16410	0.35	-0.3
3,374,989	+		ABIE41_RS16410	0.35	-1.2
3,374,989	+		ABIE41_RS16410	0.35	+0.1
3,374,989	+		ABIE41_RS16410	0.35	+0.5
3,374,989	+		ABIE41_RS16410	0.35	-0.4
3,374,989	+		ABIE41_RS16410	0.35	-0.7
3,374,989	+		ABIE41_RS16410	0.35	+0.0
3,374,989	+		ABIE41_RS16410	0.35	-0.5
3,374,990	-		ABIE41_RS16410	0.35	+0.1
3,374,990	-		ABIE41_RS16410	0.35	-0.5
3,374,990	-		ABIE41_RS16410	0.35	-0.9
3,374,990	-		ABIE41_RS16410	0.35	-0.2
3,374,990	-		ABIE41_RS16410	0.35	-0.4
3,374,990	-		ABIE41_RS16410	0.35	+1.2
3,374,990	-		ABIE41_RS16410	0.35	-0.4
3,374,990	-		ABIE41_RS16410	0.35	+0.1
3,375,034	+		ABIE41_RS16410	0.38	+0.2
3,375,035	-		ABIE41_RS16410	0.38	+0.9
3,375,271	+		ABIE41_RS16410	0.55	-0.8
3,375,271	+		ABIE41_RS16410	0.55	-1.4
3,375,271	+		ABIE41_RS16410	0.55	-1.0
3,375,271	+		ABIE41_RS16410	0.55	+0.5
3,375,271	+		ABIE41_RS16410	0.55	+0.4
3,375,271	+		ABIE41_RS16410	0.55	+1.2
3,375,271	+		ABIE41_RS16410	0.55	-0.5
3,375,272	-		ABIE41_RS16410	0.55	+0.6
3,375,272	-		ABIE41_RS16410	0.55	-1.5
3,375,272	-		ABIE41_RS16410	0.55	-0.4
3,375,272	-		ABIE41_RS16410	0.55	-0.3
3,375,272	-		ABIE41_RS16410	0.55	-0.9
3,375,272	-		ABIE41_RS16410	0.55	-0.2
3,375,272	-		ABIE41_RS16410	0.55	-0.0
3,375,272	-		ABIE41_RS16410	0.55	+0.1
3,375,316	+		ABIE41_RS16410	0.59	-0.6
3,375,317	-		ABIE41_RS16410	0.59	-0.1
3,375,317	-		ABIE41_RS16410	0.59	+0.2
3,375,317	-		ABIE41_RS16410	0.59	-1.5
3,375,328	+		ABIE41_RS16410	0.59	+0.8
3,375,431	-		ABIE41_RS16410	0.67	+1.4