Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16395

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
3,370,754	+		ABIE41_RS16390	0.57	-0.1
3,370,755	-		ABIE41_RS16390	0.57	+0.2
3,370,755	-		ABIE41_RS16390	0.57	-0.8
3,370,770	-		ABIE41_RS16390	0.59	-0.9
3,371,134	-				-0.2
3,371,189	+				+0.3
3,371,190	-				-0.3
3,371,400	-				-0.1
3,371,400	-				+0.0
3,371,440	-				+0.0
3,371,446	+				+3.1
3,371,446	+				+0.5
3,371,447	-				-0.7
3,371,711	+		ABIE41_RS16395	0.11	+1.5
3,371,711	+		ABIE41_RS16395	0.11	-0.2
3,371,712	-		ABIE41_RS16395	0.11	-0.0
3,371,712	-		ABIE41_RS16395	0.11	-0.2
3,371,712	-		ABIE41_RS16395	0.11	+0.6
3,371,860	-		ABIE41_RS16395	0.23	+0.0
3,371,860	-		ABIE41_RS16395	0.23	+0.2
3,372,107	+		ABIE41_RS16395	0.42	-0.1
3,372,107	+		ABIE41_RS16395	0.42	-0.3
3,372,107	+		ABIE41_RS16395	0.42	-0.3
3,372,108	-		ABIE41_RS16395	0.42	-0.2
3,372,108	-		ABIE41_RS16395	0.42	-0.5
3,372,108	-		ABIE41_RS16395	0.42	+0.2
3,372,254	+		ABIE41_RS16395	0.54	+1.3
3,372,255	-		ABIE41_RS16395	0.54	-0.0
3,372,278	+		ABIE41_RS16395	0.55	-0.4
3,372,278	+		ABIE41_RS16395	0.55	-0.0
3,372,278	+		ABIE41_RS16395	0.55	+0.2
3,372,278	+		ABIE41_RS16395	0.55	-0.9
3,372,278	+		ABIE41_RS16395	0.55	-0.7
3,372,278	+		ABIE41_RS16395	0.55	-0.4
3,372,279	-		ABIE41_RS16395	0.56	-0.5
3,372,279	-		ABIE41_RS16395	0.56	-1.2
3,372,279	-		ABIE41_RS16395	0.56	+0.3
3,372,377	+		ABIE41_RS16395	0.63	+0.9
3,372,377	+		ABIE41_RS16395	0.63	-1.1
3,372,377	+		ABIE41_RS16395	0.63	-0.4
3,372,377	+		ABIE41_RS16395	0.63	+1.9
3,372,377	+		ABIE41_RS16395	0.63	+0.6
3,372,377	+		ABIE41_RS16395	0.63	+0.7
3,372,378	-		ABIE41_RS16395	0.63	+1.0
3,372,378	-		ABIE41_RS16395	0.63	-0.6
3,372,378	-		ABIE41_RS16395	0.63	+0.5
3,372,449	+		ABIE41_RS16395	0.69	-0.0
3,372,450	-		ABIE41_RS16395	0.69	-0.3
3,372,461	+		ABIE41_RS16395	0.70	+0.2
3,372,461	+		ABIE41_RS16395	0.70	-0.4
3,372,692	+		ABIE41_RS16395	0.88	-0.8
3,372,693	-		ABIE41_RS16395	0.88	-0.8
3,372,961	+		ABIE41_RS16400	0.19	+0.1
3,372,961	+		ABIE41_RS16400	0.19	+0.2
3,372,962	-		ABIE41_RS16400	0.20	-0.5
3,372,962	-		ABIE41_RS16400	0.20	+1.7
3,372,962	-		ABIE41_RS16400	0.20	-0.3
3,372,962	-		ABIE41_RS16400	0.20	+0.1
3,373,156	+		ABIE41_RS16400	0.57	+0.8
3,373,156	+		ABIE41_RS16400	0.57	+0.7
3,373,700	+		ABIE41_RS16405	0.26	+0.1
3,373,700	+		ABIE41_RS16405	0.26	-0.3
3,373,700	+		ABIE41_RS16405	0.26	+0.6
3,373,701	-		ABIE41_RS16405	0.26	-1.3
3,373,701	-		ABIE41_RS16405	0.26	-0.2