Strain Fitness in Bosea sp. OAE506 around ABIE41_RS10600

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
2,186,656	+		ABIE41_RS10595	0.53	-0.4
2,186,656	+		ABIE41_RS10595	0.53	-0.1
2,186,657	-		ABIE41_RS10595	0.53	-0.5
2,186,657	-		ABIE41_RS10595	0.53	+0.9
2,186,657	-		ABIE41_RS10595	0.53	+0.8
2,186,657	-		ABIE41_RS10595	0.53	-0.5
2,186,661	+		ABIE41_RS10595	0.53	-0.5
2,186,661	+		ABIE41_RS10595	0.53	-0.1
2,186,661	+		ABIE41_RS10595	0.53	-0.3
2,186,661	+		ABIE41_RS10595	0.53	+0.6
2,186,661	+		ABIE41_RS10595	0.53	+0.1
2,186,661	+		ABIE41_RS10595	0.53	+0.7
2,186,661	+		ABIE41_RS10595	0.53	+1.8
2,186,661	+		ABIE41_RS10595	0.53	-0.7
2,186,661	+		ABIE41_RS10595	0.53	-0.8
2,186,662	-		ABIE41_RS10595	0.53	+0.2
2,186,662	-		ABIE41_RS10595	0.53	-0.6
2,186,662	-		ABIE41_RS10595	0.53	-0.6
2,186,662	-		ABIE41_RS10595	0.53	-1.6
2,186,716	+		ABIE41_RS10595	0.57	-0.1
2,186,716	+		ABIE41_RS10595	0.57	+1.1
2,186,716	+		ABIE41_RS10595	0.57	+1.3
2,186,716	+		ABIE41_RS10595	0.57	-1.7
2,186,761	+		ABIE41_RS10595	0.60	+0.8
2,186,762	-		ABIE41_RS10595	0.60	+0.9
2,186,762	-		ABIE41_RS10595	0.60	+0.6
2,186,881	+		ABIE41_RS10595	0.68	-0.2
2,186,881	+		ABIE41_RS10595	0.68	-0.3
2,186,881	+		ABIE41_RS10595	0.68	-0.1
2,186,881	+		ABIE41_RS10595	0.68	-0.3
2,186,881	+		ABIE41_RS10595	0.68	-0.7
2,186,882	-		ABIE41_RS10595	0.68	-0.4
2,186,882	-		ABIE41_RS10595	0.68	+1.4
2,186,990	+		ABIE41_RS10595	0.75	-0.2
2,186,992	+		ABIE41_RS10595	0.75	-0.5
2,186,992	+		ABIE41_RS10595	0.75	+0.7
2,186,992	+		ABIE41_RS10595	0.75	-0.9
2,186,992	+		ABIE41_RS10595	0.75	-0.0
2,186,993	-		ABIE41_RS10595	0.75	+0.4
2,186,993	-		ABIE41_RS10595	0.75	-0.1
2,186,993	-		ABIE41_RS10595	0.75	+0.6
2,186,993	-		ABIE41_RS10595	0.75	+0.1
2,187,166	+		ABIE41_RS10595	0.86	-0.0
2,187,166	+		ABIE41_RS10595	0.86	+0.6
2,187,166	+		ABIE41_RS10595	0.86	-0.1
2,187,510	-				+4.8
2,187,511	+				+0.1
2,187,511	+				+0.1
2,187,511	+				+2.6
2,187,512	-				+0.9
2,187,512	-				-0.2
2,187,512	-				-0.1
2,187,512	-				+0.8
2,187,549	-				-0.4
2,187,652	+				-2.3
2,187,653	-				+0.3
2,187,653	-				+1.9
2,187,653	-				+0.9
2,187,794	+		ABIE41_RS10600	0.28	+0.3
2,187,794	+		ABIE41_RS10600	0.28	+0.0
2,187,795	-		ABIE41_RS10600	0.28	-0.3
2,187,795	-		ABIE41_RS10600	0.28	-0.1
2,187,860	-		ABIE41_RS10600	0.38	-0.3
2,187,860	-		ABIE41_RS10600	0.38	-0.4
2,187,887	-		ABIE41_RS10600	0.42	+0.8
2,187,887	-		ABIE41_RS10600	0.42	+0.8
2,187,887	-		ABIE41_RS10600	0.42	+0.3
2,187,890	-		ABIE41_RS10600	0.42	-0.1
2,188,060	+		ABIE41_RS10600	0.67	+0.6
2,188,060	+		ABIE41_RS10600	0.67	-0.2
2,188,061	-		ABIE41_RS10600	0.67	+0.2
2,188,061	-		ABIE41_RS10600	0.67	+0.4
2,188,061	-		ABIE41_RS10600	0.67	+0.7
2,188,061	-		ABIE41_RS10600	0.67	-2.1
2,188,255	+				+0.4
2,188,328	+				-0.5
2,188,332	-				-0.3
2,188,332	-				-1.3
2,188,388	+				-0.1
2,188,389	-				+0.6
2,188,389	-				-1.1
2,188,389	-				+0.2
2,188,389	-				-0.5
2,188,389	-				+0.7
2,188,418	-		ABIE41_RS10605	0.12	+0.3
2,188,418	-		ABIE41_RS10605	0.12	+0.0
2,188,418	-		ABIE41_RS10605	0.12	+0.0
2,188,472	+		ABIE41_RS10605	0.17	+0.9
2,188,504	+		ABIE41_RS10605	0.21	-0.5
2,188,504	+		ABIE41_RS10605	0.21	-0.0
2,188,505	-		ABIE41_RS10605	0.21	-0.1
2,188,505	-		ABIE41_RS10605	0.21	+0.2
2,188,762	-		ABIE41_RS10605	0.46	-0.4
2,189,042	+		ABIE41_RS10605	0.74	-0.6
2,189,148	-		ABIE41_RS10605	0.85	+0.3
2,189,153	+		ABIE41_RS10605	0.85	+1.3
2,189,154	-		ABIE41_RS10605	0.86	+1.1
2,189,154	-		ABIE41_RS10605	0.86	+0.3
2,189,154	-		ABIE41_RS10605	0.86	+0.5
2,189,154	-		ABIE41_RS10605	0.86	+0.0