Strain Fitness in Bosea sp. OAE506 around ABIE41_RS10560

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
2,176,956	+		ABIE41_RS10550	0.16	+0.9
2,176,957	-		ABIE41_RS10550	0.16	+0.7
2,177,286	+		ABIE41_RS10550	0.53	+0.2
2,177,550	+		ABIE41_RS10550	0.83	+1.3
2,177,551	-		ABIE41_RS10550	0.83	+1.2
2,177,551	-		ABIE41_RS10550	0.83	-0.4
2,177,578	-		ABIE41_RS10550	0.86	-0.8
2,177,578	-		ABIE41_RS10550	0.86	-0.7
2,177,773	-		ABIE41_RS10555	0.44	-1.0
2,177,805	+		ABIE41_RS10555	0.64	+0.9
2,177,805	+		ABIE41_RS10555	0.64	+1.2
2,177,805	+		ABIE41_RS10555	0.64	-0.3
2,177,806	-		ABIE41_RS10555	0.65	-0.0
2,177,806	-		ABIE41_RS10555	0.65	+0.6
2,177,847	+				+1.5
2,177,847	+				+0.4
2,177,847	+				-0.5
2,177,847	+				-0.1
2,177,848	-				+0.8
2,177,848	-				+0.1
2,177,848	-				-0.4
2,177,848	-				+1.0
2,177,897	+				+0.3
2,177,897	+				+0.2
2,177,897	+				-1.1
2,177,898	-				+0.1
2,177,898	-				+0.8
2,177,964	+		ABIE41_RS10560	0.12	-0.3
2,177,964	+		ABIE41_RS10560	0.12	-0.7
2,177,965	-		ABIE41_RS10560	0.12	+0.2
2,178,098	+		ABIE41_RS10560	0.30	-0.5
2,178,098	+		ABIE41_RS10560	0.30	-0.1
2,178,180	-		ABIE41_RS10560	0.40	-0.4
2,178,251	+		ABIE41_RS10560	0.50	-0.3
2,178,251	+		ABIE41_RS10560	0.50	-0.6
2,178,251	+		ABIE41_RS10560	0.50	+0.4
2,178,317	+		ABIE41_RS10560	0.58	+0.1
2,178,317	+		ABIE41_RS10560	0.58	-0.6
2,178,317	+		ABIE41_RS10560	0.58	+0.8
2,178,317	+		ABIE41_RS10560	0.58	-1.0
2,178,317	+		ABIE41_RS10560	0.58	-0.6
2,178,318	-		ABIE41_RS10560	0.58	-1.0
2,178,318	-		ABIE41_RS10560	0.58	+0.2
2,178,318	-		ABIE41_RS10560	0.58	-0.1
2,178,318	-		ABIE41_RS10560	0.58	-0.2
2,178,318	-		ABIE41_RS10560	0.58	+1.3
2,178,341	+		ABIE41_RS10560	0.61	-0.1
2,178,401	+		ABIE41_RS10560	0.69	-0.5
2,178,401	+		ABIE41_RS10560	0.69	-0.3
2,178,401	+		ABIE41_RS10560	0.69	-0.1
2,178,401	+		ABIE41_RS10560	0.69	+0.5
2,178,402	-		ABIE41_RS10560	0.69	+1.5
2,178,402	-		ABIE41_RS10560	0.69	+0.2
2,178,402	-		ABIE41_RS10560	0.69	-2.4
2,178,419	+		ABIE41_RS10560	0.72	+0.5
2,178,419	+		ABIE41_RS10560	0.72	+0.2
2,178,419	+		ABIE41_RS10560	0.72	-1.1
2,178,419	+		ABIE41_RS10560	0.72	+1.0
2,178,419	+		ABIE41_RS10560	0.72	+0.1
2,178,419	+		ABIE41_RS10560	0.72	+1.6
2,178,419	+		ABIE41_RS10560	0.72	+2.3
2,178,420	-		ABIE41_RS10560	0.72	-0.2
2,178,420	-		ABIE41_RS10560	0.72	+1.1
2,178,453	-		ABIE41_RS10560	0.76	-0.5
2,178,494	+		ABIE41_RS10560	0.81	+1.3
2,178,494	+		ABIE41_RS10560	0.81	+0.1
2,178,495	-		ABIE41_RS10560	0.81	-0.0
2,178,495	-		ABIE41_RS10560	0.81	+1.3
2,178,793	+				-0.1
2,178,793	+				+0.2
2,178,793	+				-1.5
2,178,793	+				+0.7
2,178,793	+				-0.6
2,178,793	+				+0.3
2,178,793	+				+1.0
2,178,793	+				-0.2
2,178,794	-				+1.0
2,178,794	-				+1.4
2,178,794	-				+0.2
2,178,794	-				-0.0
2,178,794	-				-0.2
2,178,794	-				-0.1
2,178,832	+		ABIE41_RS10565	0.11	+0.4
2,178,856	+		ABIE41_RS10565	0.12	+0.1
2,178,856	+		ABIE41_RS10565	0.12	+1.4
2,178,856	+		ABIE41_RS10565	0.12	-0.6
2,178,857	-		ABIE41_RS10565	0.13	-2.0
2,178,857	-		ABIE41_RS10565	0.13	+0.1
2,178,910	+		ABIE41_RS10565	0.16	+0.1
2,178,910	+		ABIE41_RS10565	0.16	+0.7
2,178,910	+		ABIE41_RS10565	0.16	-0.4
2,178,910	+		ABIE41_RS10565	0.16	+1.2
2,178,910	+		ABIE41_RS10565	0.16	-0.7
2,178,910	+		ABIE41_RS10565	0.16	-0.1
2,178,910	+		ABIE41_RS10565	0.16	-1.4
2,178,910	+		ABIE41_RS10565	0.16	-1.0
2,178,911	-		ABIE41_RS10565	0.16	+0.2
2,178,911	-		ABIE41_RS10565	0.16	+0.2
2,178,911	-		ABIE41_RS10565	0.16	+0.2
2,178,911	-		ABIE41_RS10565	0.16	-0.7
2,178,911	-		ABIE41_RS10565	0.16	+0.5
2,178,911	-		ABIE41_RS10565	0.16	-0.6
2,179,006	+		ABIE41_RS10565	0.21	-0.5
2,179,006	+		ABIE41_RS10565	0.21	-0.9
2,179,007	-		ABIE41_RS10565	0.22	-0.4
2,179,007	-		ABIE41_RS10565	0.22	+0.0
2,179,027	+		ABIE41_RS10565	0.23	-0.2
2,179,027	+		ABIE41_RS10565	0.23	-0.5
2,179,027	+		ABIE41_RS10565	0.23	+0.8
2,179,027	+		ABIE41_RS10565	0.23	-0.4
2,179,028	-		ABIE41_RS10565	0.23	+1.2
2,179,028	-		ABIE41_RS10565	0.23	+1.4
2,179,028	-		ABIE41_RS10565	0.23	-0.1
2,179,028	-		ABIE41_RS10565	0.23	+0.6
2,179,028	-		ABIE41_RS10565	0.23	-0.4
2,179,028	-		ABIE41_RS10565	0.23	-0.2
2,179,028	-		ABIE41_RS10565	0.23	-0.9
2,179,028	-		ABIE41_RS10565	0.23	+0.1
2,179,028	-		ABIE41_RS10565	0.23	+0.6
2,179,081	+		ABIE41_RS10565	0.26	-0.0
2,179,081	+		ABIE41_RS10565	0.26	-0.2
2,179,144	+		ABIE41_RS10565	0.30	-0.1
2,179,144	+		ABIE41_RS10565	0.30	+1.1
2,179,144	+		ABIE41_RS10565	0.30	+0.4
2,179,144	+		ABIE41_RS10565	0.30	+1.0
2,179,145	-		ABIE41_RS10565	0.30	-0.6
2,179,145	-		ABIE41_RS10565	0.30	-0.3
2,179,145	-		ABIE41_RS10565	0.30	+1.3
2,179,312	+		ABIE41_RS10565	0.40	-0.1
2,179,312	+		ABIE41_RS10565	0.40	+0.4
2,179,312	+		ABIE41_RS10565	0.40	+0.7
2,179,340	+		ABIE41_RS10565	0.41	-0.6
2,179,342	+		ABIE41_RS10565	0.42	+0.1
2,179,342	+		ABIE41_RS10565	0.42	+1.1
2,179,342	+		ABIE41_RS10565	0.42	+0.6
2,179,342	+		ABIE41_RS10565	0.42	-0.1
2,179,342	+		ABIE41_RS10565	0.42	-0.9
2,179,342	+		ABIE41_RS10565	0.42	-0.2
2,179,342	+		ABIE41_RS10565	0.42	-0.9
2,179,343	-		ABIE41_RS10565	0.42	-0.6
2,179,343	-		ABIE41_RS10565	0.42	+1.1
2,179,343	-		ABIE41_RS10565	0.42	-0.4
2,179,343	-		ABIE41_RS10565	0.42	-0.0
2,179,343	-		ABIE41_RS10565	0.42	-0.1
2,179,343	-		ABIE41_RS10565	0.42	-0.9
2,179,390	+		ABIE41_RS10565	0.44	-0.6
2,179,391	-		ABIE41_RS10565	0.45	-2.0
2,179,391	-		ABIE41_RS10565	0.45	-0.1
2,179,391	-		ABIE41_RS10565	0.45	+0.1
2,179,423	+		ABIE41_RS10565	0.46	+0.2
2,179,424	-		ABIE41_RS10565	0.47	-0.1
2,179,424	-		ABIE41_RS10565	0.47	-1.2
2,179,426	+		ABIE41_RS10565	0.47	-0.1
2,179,426	+		ABIE41_RS10565	0.47	-1.2
2,179,427	-		ABIE41_RS10565	0.47	+0.8
2,179,427	-		ABIE41_RS10565	0.47	+0.6
2,179,427	-		ABIE41_RS10565	0.47	+0.1
2,179,473	-		ABIE41_RS10565	0.49	-0.5
2,179,473	-		ABIE41_RS10565	0.49	+0.7
2,179,481	-		ABIE41_RS10565	0.50	-0.7
2,179,525	+		ABIE41_RS10565	0.53	-0.5
2,179,525	+		ABIE41_RS10565	0.53	-0.6
2,179,526	-		ABIE41_RS10565	0.53	-0.2
2,179,526	-		ABIE41_RS10565	0.53	-1.1
2,179,526	-		ABIE41_RS10565	0.53	-0.1
2,179,609	+		ABIE41_RS10565	0.58	+0.5
2,179,609	+		ABIE41_RS10565	0.58	+0.1
2,179,610	-		ABIE41_RS10565	0.58	+0.7
2,179,626	+		ABIE41_RS10565	0.59	-0.5
2,179,627	+		ABIE41_RS10565	0.59	+1.3
2,179,627	+		ABIE41_RS10565	0.59	+0.0
2,179,627	+		ABIE41_RS10565	0.59	+0.5
2,179,627	+		ABIE41_RS10565	0.59	+0.7
2,179,627	+		ABIE41_RS10565	0.59	-0.1
2,179,628	-		ABIE41_RS10565	0.59	-0.7
2,179,628	-		ABIE41_RS10565	0.59	+0.2
2,179,628	-		ABIE41_RS10565	0.59	-0.4
2,179,628	-		ABIE41_RS10565	0.59	-0.2
2,179,628	-		ABIE41_RS10565	0.59	-1.4