Strain Fitness in Bosea sp. OAE506 around ABIE41_RS10550

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
2,175,865	+		ABIE41_RS10545	0.34	+0.2
2,175,865	+		ABIE41_RS10545	0.34	-0.2
2,176,096	+		ABIE41_RS10545	0.50	-0.1
2,176,096	+		ABIE41_RS10545	0.50	-1.1
2,176,097	-		ABIE41_RS10545	0.50	+1.1
2,176,108	-		ABIE41_RS10545	0.51	-0.1
2,176,159	+		ABIE41_RS10545	0.55	+0.4
2,176,159	+		ABIE41_RS10545	0.55	-1.4
2,176,159	+		ABIE41_RS10545	0.55	+0.1
2,176,159	+		ABIE41_RS10545	0.55	+1.1
2,176,159	+		ABIE41_RS10545	0.55	+0.1
2,176,159	+		ABIE41_RS10545	0.55	-0.6
2,176,159	+		ABIE41_RS10545	0.55	+0.2
2,176,159	+		ABIE41_RS10545	0.55	-0.7
2,176,159	+		ABIE41_RS10545	0.55	+0.4
2,176,159	+		ABIE41_RS10545	0.55	+0.8
2,176,159	+		ABIE41_RS10545	0.55	+0.9
2,176,159	+		ABIE41_RS10545	0.55	-0.3
2,176,159	+		ABIE41_RS10545	0.55	-0.7
2,176,160	-		ABIE41_RS10545	0.55	+0.1
2,176,160	-		ABIE41_RS10545	0.55	-0.0
2,176,160	-		ABIE41_RS10545	0.55	+0.1
2,176,160	-		ABIE41_RS10545	0.55	+0.9
2,176,160	-		ABIE41_RS10545	0.55	+0.3
2,176,160	-		ABIE41_RS10545	0.55	+0.8
2,176,160	-		ABIE41_RS10545	0.55	-0.6
2,176,160	-		ABIE41_RS10545	0.55	+0.5
2,176,160	-		ABIE41_RS10545	0.55	-0.4
2,176,198	+		ABIE41_RS10545	0.57	-0.9
2,176,198	+		ABIE41_RS10545	0.57	-0.4
2,176,199	-		ABIE41_RS10545	0.57	+0.6
2,176,199	-		ABIE41_RS10545	0.57	+0.9
2,176,199	-		ABIE41_RS10545	0.57	-0.8
2,176,231	+		ABIE41_RS10545	0.60	-1.0
2,176,231	+		ABIE41_RS10545	0.60	+1.4
2,176,231	+		ABIE41_RS10545	0.60	-1.5
2,176,231	+		ABIE41_RS10545	0.60	-0.1
2,176,231	+		ABIE41_RS10545	0.60	-2.1
2,176,231	+		ABIE41_RS10545	0.60	+0.2
2,176,232	-		ABIE41_RS10545	0.60	-1.6
2,176,294	+		ABIE41_RS10545	0.64	-0.3
2,176,295	-		ABIE41_RS10545	0.64	-0.2
2,176,295	-		ABIE41_RS10545	0.64	+0.3
2,176,480	+		ABIE41_RS10545	0.77	-0.0
2,176,480	+		ABIE41_RS10545	0.77	-1.2
2,176,480	+		ABIE41_RS10545	0.77	-1.0
2,176,481	-		ABIE41_RS10545	0.77	-1.0
2,176,481	-		ABIE41_RS10545	0.77	+0.0
2,176,481	-		ABIE41_RS10545	0.77	-0.1
2,176,481	-		ABIE41_RS10545	0.77	+0.4
2,176,481	-		ABIE41_RS10545	0.77	+0.5
2,176,558	+		ABIE41_RS10545	0.82	-0.3
2,176,558	+		ABIE41_RS10545	0.82	+0.2
2,176,559	-		ABIE41_RS10545	0.82	+0.4
2,176,559	-		ABIE41_RS10545	0.82	-0.2
2,176,559	-		ABIE41_RS10545	0.82	+0.0
2,176,559	-		ABIE41_RS10545	0.82	-0.3
2,176,561	+		ABIE41_RS10545	0.82	-0.1
2,176,561	+		ABIE41_RS10545	0.82	+0.8
2,176,562	-		ABIE41_RS10545	0.82	-0.0
2,176,681	+				+0.9
2,176,681	+				+0.7
2,176,681	+				-0.6
2,176,682	-				-1.8
2,176,682	-				+0.1
2,176,684	+				-0.2
2,176,684	+				-0.1
2,176,685	-				-1.0
2,176,685	-				+0.3
2,176,754	-				-0.3
2,176,818	+				+0.7
2,176,819	-				-0.2
2,176,845	+				+0.7
2,176,845	+				+0.8
2,176,845	+				+0.1
2,176,845	+				-0.1
2,176,846	-				-1.1
2,176,846	-				+0.7
2,176,846	-				+1.2
2,176,846	-				+0.0
2,176,846	-				+0.2
2,176,846	-				+0.1
2,176,846	-				+0.0
2,176,846	-				-0.5
2,176,956	+		ABIE41_RS10550	0.16	+0.9
2,176,957	-		ABIE41_RS10550	0.16	+0.7
2,177,286	+		ABIE41_RS10550	0.53	+0.2
2,177,550	+		ABIE41_RS10550	0.83	+1.3
2,177,551	-		ABIE41_RS10550	0.83	+1.2
2,177,551	-		ABIE41_RS10550	0.83	-0.4
2,177,578	-		ABIE41_RS10550	0.86	-0.8
2,177,578	-		ABIE41_RS10550	0.86	-0.7
2,177,773	-		ABIE41_RS10555	0.44	-1.0
2,177,805	+		ABIE41_RS10555	0.64	+0.9
2,177,805	+		ABIE41_RS10555	0.64	+1.2
2,177,805	+		ABIE41_RS10555	0.64	-0.3
2,177,806	-		ABIE41_RS10555	0.65	-0.0
2,177,806	-		ABIE41_RS10555	0.65	+0.6
2,177,847	+				+1.5
2,177,847	+				+0.4
2,177,847	+				-0.5
2,177,847	+				-0.1
2,177,848	-				+0.8
2,177,848	-				+0.1
2,177,848	-				-0.4
2,177,848	-				+1.0
2,177,897	+				+0.3
2,177,897	+				+0.2
2,177,897	+				-1.1
2,177,898	-				+0.1
2,177,898	-				+0.8
2,177,964	+		ABIE41_RS10560	0.12	-0.3
2,177,964	+		ABIE41_RS10560	0.12	-0.7
2,177,965	-		ABIE41_RS10560	0.12	+0.2
2,178,098	+		ABIE41_RS10560	0.30	-0.5
2,178,098	+		ABIE41_RS10560	0.30	-0.1
2,178,180	-		ABIE41_RS10560	0.40	-0.4
2,178,251	+		ABIE41_RS10560	0.50	-0.3
2,178,251	+		ABIE41_RS10560	0.50	-0.6
2,178,251	+		ABIE41_RS10560	0.50	+0.4
2,178,317	+		ABIE41_RS10560	0.58	+0.1
2,178,317	+		ABIE41_RS10560	0.58	-0.6
2,178,317	+		ABIE41_RS10560	0.58	+0.8
2,178,317	+		ABIE41_RS10560	0.58	-1.0
2,178,317	+		ABIE41_RS10560	0.58	-0.6
2,178,318	-		ABIE41_RS10560	0.58	-1.0
2,178,318	-		ABIE41_RS10560	0.58	+0.2
2,178,318	-		ABIE41_RS10560	0.58	-0.1
2,178,318	-		ABIE41_RS10560	0.58	-0.2
2,178,318	-		ABIE41_RS10560	0.58	+1.3
2,178,341	+		ABIE41_RS10560	0.61	-0.1
2,178,401	+		ABIE41_RS10560	0.69	-0.5
2,178,401	+		ABIE41_RS10560	0.69	-0.3
2,178,401	+		ABIE41_RS10560	0.69	-0.1
2,178,401	+		ABIE41_RS10560	0.69	+0.5
2,178,402	-		ABIE41_RS10560	0.69	+1.5
2,178,402	-		ABIE41_RS10560	0.69	+0.2
2,178,402	-		ABIE41_RS10560	0.69	-2.4
2,178,419	+		ABIE41_RS10560	0.72	+0.5
2,178,419	+		ABIE41_RS10560	0.72	+0.2
2,178,419	+		ABIE41_RS10560	0.72	-1.1
2,178,419	+		ABIE41_RS10560	0.72	+1.0
2,178,419	+		ABIE41_RS10560	0.72	+0.1
2,178,419	+		ABIE41_RS10560	0.72	+1.6
2,178,419	+		ABIE41_RS10560	0.72	+2.3
2,178,420	-		ABIE41_RS10560	0.72	-0.2
2,178,420	-		ABIE41_RS10560	0.72	+1.1
2,178,453	-		ABIE41_RS10560	0.76	-0.5
2,178,494	+		ABIE41_RS10560	0.81	+1.3
2,178,494	+		ABIE41_RS10560	0.81	+0.1
2,178,495	-		ABIE41_RS10560	0.81	-0.0
2,178,495	-		ABIE41_RS10560	0.81	+1.3