Strain Fitness in Bosea sp. OAE506 around ABIE41_RS09715

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
2,007,053	+		ABIE41_RS09710	0.25	+0.1
2,007,053	+		ABIE41_RS09710	0.25	+1.2
2,007,054	-		ABIE41_RS09710	0.25	-0.1
2,007,054	-		ABIE41_RS09710	0.25	-0.3
2,007,070	+		ABIE41_RS09710	0.27	-0.1
2,007,071	-		ABIE41_RS09710	0.27	-0.9
2,007,071	-		ABIE41_RS09710	0.27	+0.5
2,007,071	-		ABIE41_RS09710	0.27	+0.4
2,007,071	-		ABIE41_RS09710	0.27	-0.1
2,007,180	-		ABIE41_RS09710	0.37	+1.1
2,007,467	+		ABIE41_RS09710	0.63	+0.5
2,007,467	+		ABIE41_RS09710	0.63	-1.3
2,007,467	+		ABIE41_RS09710	0.63	-0.1
2,007,467	+		ABIE41_RS09710	0.63	+0.9
2,007,467	+		ABIE41_RS09710	0.63	-2.6
2,007,467	+		ABIE41_RS09710	0.63	-1.0
2,007,468	-		ABIE41_RS09710	0.63	+0.3
2,007,468	-		ABIE41_RS09710	0.63	-0.1
2,007,468	-		ABIE41_RS09710	0.63	-1.7
2,007,468	-		ABIE41_RS09710	0.63	-0.6
2,007,468	-		ABIE41_RS09710	0.63	+0.0
2,007,468	-		ABIE41_RS09710	0.63	+0.9
2,007,468	-		ABIE41_RS09710	0.63	+0.9
2,007,636	-		ABIE41_RS09710	0.78	-0.3
2,007,740	+		ABIE41_RS09710	0.87	+0.4
2,007,741	-		ABIE41_RS09710	0.87	+0.0
2,008,014	+				-0.5
2,008,014	+				-0.5
2,008,014	+				-0.2
2,008,014	+				-1.9
2,008,015	-				+0.6
2,008,015	-				-0.2
2,008,224	+		ABIE41_RS09715	0.28	-0.4
2,008,224	+		ABIE41_RS09715	0.28	-0.1
2,008,224	+		ABIE41_RS09715	0.28	-0.0
2,008,224	+		ABIE41_RS09715	0.28	+0.0
2,008,224	+		ABIE41_RS09715	0.28	+1.2
2,008,224	+		ABIE41_RS09715	0.28	+0.7
2,008,224	+		ABIE41_RS09715	0.28	-0.8
2,008,225	-		ABIE41_RS09715	0.28	-1.2
2,008,225	-		ABIE41_RS09715	0.28	-0.4
2,008,225	-		ABIE41_RS09715	0.28	-1.7
2,008,225	-		ABIE41_RS09715	0.28	-0.4
2,008,303	-		ABIE41_RS09715	0.35	-1.0
2,008,303	-		ABIE41_RS09715	0.35	+0.8
2,008,341	+		ABIE41_RS09715	0.38	-0.4
2,008,341	+		ABIE41_RS09715	0.38	-0.3
2,008,342	-		ABIE41_RS09715	0.39	+0.6
2,008,342	-		ABIE41_RS09715	0.39	-1.2
2,008,342	-		ABIE41_RS09715	0.39	+1.7
2,008,425	+		ABIE41_RS09715	0.46	-0.8
2,008,425	+		ABIE41_RS09715	0.46	-0.1
2,008,426	-		ABIE41_RS09715	0.46	-0.1
2,008,428	-		ABIE41_RS09715	0.46	-1.5
2,008,445	+		ABIE41_RS09715	0.48	-0.3
2,008,479	+		ABIE41_RS09715	0.51	-0.5
2,008,479	+		ABIE41_RS09715	0.51	-0.4
2,008,480	-		ABIE41_RS09715	0.51	+0.7
2,008,480	-		ABIE41_RS09715	0.51	-0.0
2,008,521	+		ABIE41_RS09715	0.54	+1.6
2,008,521	+		ABIE41_RS09715	0.54	-0.9
2,008,522	-		ABIE41_RS09715	0.54	-0.0
2,008,674	+		ABIE41_RS09715	0.68	-0.5
2,008,674	+		ABIE41_RS09715	0.68	-1.6
2,008,674	+		ABIE41_RS09715	0.68	-1.1
2,008,675	-		ABIE41_RS09715	0.68	+0.2
2,008,675	-		ABIE41_RS09715	0.68	-0.1
2,008,675	-		ABIE41_RS09715	0.68	-0.9
2,008,675	-		ABIE41_RS09715	0.68	-0.7
2,008,755	+		ABIE41_RS09715	0.75	+1.2
2,008,755	+		ABIE41_RS09715	0.75	+0.2
2,008,755	+		ABIE41_RS09715	0.75	-0.7
2,008,756	-		ABIE41_RS09715	0.75	-0.0
2,008,756	-		ABIE41_RS09715	0.75	-0.8
2,008,756	-		ABIE41_RS09715	0.75	-1.0
2,008,756	-		ABIE41_RS09715	0.75	+0.3
2,008,756	-		ABIE41_RS09715	0.75	+0.0
2,008,756	-		ABIE41_RS09715	0.75	-0.3
2,008,757	-		ABIE41_RS09715	0.75	+1.1
2,008,758	+		ABIE41_RS09715	0.75	+0.4
2,008,758	+		ABIE41_RS09715	0.75	+0.1
2,008,759	-		ABIE41_RS09715	0.75	-0.9
2,008,989	+				+1.9
2,008,990	-				-0.3
2,009,014	-				+0.8
2,009,014	-				+0.5
2,009,361	+		ABIE41_RS09720	0.19	-0.3
2,009,361	+		ABIE41_RS09720	0.19	+0.1
2,009,413	+		ABIE41_RS09720	0.25	+0.7
2,009,496	+		ABIE41_RS09720	0.35	+0.1
2,009,496	+		ABIE41_RS09720	0.35	+0.0
2,009,625	+		ABIE41_RS09720	0.51	-0.0
2,009,625	+		ABIE41_RS09720	0.51	-0.9
2,009,625	+		ABIE41_RS09720	0.51	+0.4
2,009,626	-		ABIE41_RS09720	0.51	+0.1
2,009,626	-		ABIE41_RS09720	0.51	+0.6
2,009,626	-		ABIE41_RS09720	0.51	-0.4
2,009,626	-		ABIE41_RS09720	0.51	+1.0
2,009,926	-		ABIE41_RS09720	0.87	+0.0
2,009,934	+		ABIE41_RS09720	0.88	+2.6
2,009,934	+		ABIE41_RS09720	0.88	+0.1
2,009,934	+		ABIE41_RS09720	0.88	-0.6
2,009,935	-		ABIE41_RS09720	0.88	-0.4
2,009,935	-		ABIE41_RS09720	0.88	-0.1
2,009,967	+				-0.4
2,009,967	+				+0.1
2,009,967	+				+0.7
2,009,967	+				+0.3
2,009,968	-				+0.0
2,009,968	-				-0.3
2,009,968	-				-1.1
2,009,968	-				-1.9
2,009,968	-				+0.0
2,009,968	-				+0.9
2,009,998	-				+1.7