Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08810 and ABIE41_RS08815 are separated by 87 nucleotides ABIE41_RS08815 and ABIE41_RS08820 are separated by 31 nucleotides ABIE41_RS08820 and ABIE41_RS08825 overlap by 4 nucleotides
ABIE41_RS08810: ABIE41_RS08810 - hypothetical protein, at 1,824,551 to 1,824,814
_RS08810
ABIE41_RS08815: ABIE41_RS08815 - RbsD/FucU domain-containing protein, at 1,824,902 to 1,825,357
_RS08815
ABIE41_RS08820: ABIE41_RS08820 - amidohydrolase family protein, at 1,825,389 to 1,826,237
_RS08820
ABIE41_RS08825: ABIE41_RS08825 - aldo/keto reductase, at 1,826,234 to 1,827,259
_RS08825
Position (kb) 1825
1826
1827 Strain fitness (log2 ratio) -1
0
1
2 at 1824.498 kb on - strand at 1824.514 kb on + strand at 1824.515 kb on - strand at 1824.951 kb on + strand, within ABIE41_RS08815 at 1824.952 kb on - strand, within ABIE41_RS08815 at 1824.952 kb on - strand, within ABIE41_RS08815 at 1825.005 kb on + strand, within ABIE41_RS08815 at 1825.005 kb on + strand, within ABIE41_RS08815 at 1825.005 kb on + strand, within ABIE41_RS08815 at 1825.005 kb on + strand, within ABIE41_RS08815 at 1825.006 kb on - strand, within ABIE41_RS08815 at 1825.006 kb on - strand, within ABIE41_RS08815 at 1825.006 kb on - strand, within ABIE41_RS08815 at 1825.414 kb on + strand at 1825.415 kb on - strand at 1825.415 kb on - strand at 1825.415 kb on - strand at 1825.415 kb on - strand at 1826.044 kb on + strand, within ABIE41_RS08820 at 1826.044 kb on + strand, within ABIE41_RS08820 at 1826.180 kb on - strand at 1826.180 kb on - strand at 1826.180 kb on - strand at 1826.278 kb on + strand at 1826.278 kb on + strand at 1826.493 kb on + strand, within ABIE41_RS08825 at 1826.493 kb on + strand, within ABIE41_RS08825 at 1826.493 kb on + strand, within ABIE41_RS08825 at 1826.493 kb on + strand, within ABIE41_RS08825 at 1826.493 kb on + strand, within ABIE41_RS08825 at 1826.493 kb on + strand, within ABIE41_RS08825 at 1826.494 kb on - strand, within ABIE41_RS08825 at 1826.494 kb on - strand, within ABIE41_RS08825 at 1826.494 kb on - strand, within ABIE41_RS08825 at 1826.494 kb on - strand, within ABIE41_RS08825 at 1826.494 kb on - strand, within ABIE41_RS08825 at 1826.494 kb on - strand, within ABIE41_RS08825 at 1826.686 kb on + strand, within ABIE41_RS08825 at 1826.687 kb on - strand, within ABIE41_RS08825 at 1826.687 kb on - strand, within ABIE41_RS08825 at 1826.904 kb on + strand, within ABIE41_RS08825 at 1826.904 kb on + strand, within ABIE41_RS08825 at 1826.904 kb on + strand, within ABIE41_RS08825 at 1826.904 kb on + strand, within ABIE41_RS08825 at 1826.905 kb on - strand, within ABIE41_RS08825 at 1826.905 kb on - strand, within ABIE41_RS08825 at 1826.910 kb on + strand, within ABIE41_RS08825 at 1827.163 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 1,824,498 - +1.6 1,824,514 + -0.5 1,824,515 - +0.2 1,824,951 + ABIE41_RS08815 0.11 -1.1 1,824,952 - ABIE41_RS08815 0.11 -0.4 1,824,952 - ABIE41_RS08815 0.11 -0.2 1,825,005 + ABIE41_RS08815 0.23 -0.2 1,825,005 + ABIE41_RS08815 0.23 -1.0 1,825,005 + ABIE41_RS08815 0.23 +0.0 1,825,005 + ABIE41_RS08815 0.23 -1.1 1,825,006 - ABIE41_RS08815 0.23 +0.3 1,825,006 - ABIE41_RS08815 0.23 -0.1 1,825,006 - ABIE41_RS08815 0.23 +0.9 1,825,414 + -0.9 1,825,415 - +0.1 1,825,415 - +0.5 1,825,415 - -1.0 1,825,415 - +0.1 1,826,044 + ABIE41_RS08820 0.77 +0.9 1,826,044 + ABIE41_RS08820 0.77 +0.1 1,826,180 - +1.1 1,826,180 - +0.1 1,826,180 - +0.3 1,826,278 + +0.0 1,826,278 + -0.4 1,826,493 + ABIE41_RS08825 0.25 -0.7 1,826,493 + ABIE41_RS08825 0.25 -0.6 1,826,493 + ABIE41_RS08825 0.25 +0.5 1,826,493 + ABIE41_RS08825 0.25 +0.5 1,826,493 + ABIE41_RS08825 0.25 +1.1 1,826,493 + ABIE41_RS08825 0.25 -0.1 1,826,494 - ABIE41_RS08825 0.25 -0.3 1,826,494 - ABIE41_RS08825 0.25 +0.6 1,826,494 - ABIE41_RS08825 0.25 +0.5 1,826,494 - ABIE41_RS08825 0.25 +1.6 1,826,494 - ABIE41_RS08825 0.25 +0.6 1,826,494 - ABIE41_RS08825 0.25 -1.0 1,826,686 + ABIE41_RS08825 0.44 -0.1 1,826,687 - ABIE41_RS08825 0.44 +0.3 1,826,687 - ABIE41_RS08825 0.44 +0.6 1,826,904 + ABIE41_RS08825 0.65 -0.5 1,826,904 + ABIE41_RS08825 0.65 -1.2 1,826,904 + ABIE41_RS08825 0.65 -0.8 1,826,904 + ABIE41_RS08825 0.65 -0.3 1,826,905 - ABIE41_RS08825 0.65 +2.2 1,826,905 - ABIE41_RS08825 0.65 -1.1 1,826,910 + ABIE41_RS08825 0.66 -0.1 1,827,163 - +0.1
Or see this region's nucleotide sequence