Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04985

Experiment: Ying_all64 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04975 and ABIE41_RS04980 are separated by 2 nucleotidesABIE41_RS04980 and ABIE41_RS04985 are separated by 316 nucleotidesABIE41_RS04985 and ABIE41_RS04990 are separated by 13 nucleotidesABIE41_RS04990 and ABIE41_RS04995 overlap by 4 nucleotidesABIE41_RS04995 and ABIE41_RS05000 are separated by 116 nucleotides ABIE41_RS04975: ABIE41_RS04975 - heme exporter protein CcmB, at 1,036,774 to 1,037,442 _RS04975 ABIE41_RS04980: ABIE41_RS04980 - hypothetical protein, at 1,037,445 to 1,037,687 _RS04980 ABIE41_RS04985: ABIE41_RS04985 - heme ABC transporter permease, at 1,038,004 to 1,038,765 _RS04985 ABIE41_RS04990: ABIE41_RS04990 - heme exporter protein CcmD, at 1,038,779 to 1,038,952 _RS04990 ABIE41_RS04995: ABIE41_RS04995 - DsbE family thiol:disulfide interchange protein, at 1,038,949 to 1,039,554 _RS04995 ABIE41_RS05000: ABIE41_RS05000 - phosphoribosylformylglycinamidine synthase subunit PurQ, at 1,039,671 to 1,040,366 _RS05000 Position (kb) 1038 1039Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1037.440 kb on + strandat 1037.440 kb on + strandat 1037.440 kb on + strandat 1037.440 kb on + strandat 1037.440 kb on + strandat 1037.441 kb on - strandat 1037.567 kb on + strand, within ABIE41_RS04980at 1037.567 kb on + strand, within ABIE41_RS04980at 1037.567 kb on + strand, within ABIE41_RS04980at 1037.568 kb on - strand, within ABIE41_RS04980at 1037.568 kb on - strand, within ABIE41_RS04980at 1037.755 kb on - strandat 1037.953 kb on + strandat 1037.953 kb on + strandat 1037.953 kb on + strandat 1037.953 kb on + strandat 1039.014 kb on - strand, within ABIE41_RS04995

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
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1,037,440 + -1.0
1,037,440 + +3.4
1,037,440 + -0.1
1,037,440 + +0.9
1,037,440 + -1.5
1,037,441 - +1.5
1,037,567 + ABIE41_RS04980 0.50 -0.4
1,037,567 + ABIE41_RS04980 0.50 -2.7
1,037,567 + ABIE41_RS04980 0.50 -0.2
1,037,568 - ABIE41_RS04980 0.51 -0.5
1,037,568 - ABIE41_RS04980 0.51 -1.0
1,037,755 - +0.3
1,037,953 + -0.0
1,037,953 + +1.8
1,037,953 + -0.1
1,037,953 + +0.3
1,039,014 - ABIE41_RS04995 0.11 +0.1

Or see this region's nucleotide sequence