Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04950 and ABIE41_RS04955 are separated by 183 nucleotides ABIE41_RS04955 and ABIE41_RS04960 are separated by 265 nucleotides ABIE41_RS04960 and ABIE41_RS04965 are separated by 112 nucleotides
ABIE41_RS04950: ABIE41_RS04950 - 3-hydroxyacyl-ACP dehydratase FabZ family protein, at 1,029,973 to 1,030,446
_RS04950
ABIE41_RS04955: ABIE41_RS04955 - acyl carrier protein, at 1,030,630 to 1,030,911
_RS04955
ABIE41_RS04960: ABIE41_RS04960 - methyl-accepting chemotaxis protein, at 1,031,177 to 1,033,111
_RS04960
ABIE41_RS04965: ABIE41_RS04965 - aconitate hydratase AcnA, at 1,033,224 to 1,035,923
_RS04965
Position (kb) 1031
1032
1033
1034 Strain fitness (log2 ratio) -1
0
1
2
3 at 1030.262 kb on + strand, within ABIE41_RS04950 at 1030.262 kb on + strand, within ABIE41_RS04950 at 1030.433 kb on + strand at 1030.691 kb on + strand, within ABIE41_RS04955 at 1030.691 kb on + strand, within ABIE41_RS04955 at 1031.017 kb on - strand at 1031.258 kb on + strand at 1031.258 kb on + strand at 1031.259 kb on - strand at 1031.259 kb on - strand at 1031.259 kb on - strand at 1031.259 kb on - strand at 1031.259 kb on - strand at 1031.369 kb on + strand at 1031.369 kb on + strand at 1031.369 kb on + strand at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.537 kb on + strand, within ABIE41_RS04960 at 1031.538 kb on - strand, within ABIE41_RS04960 at 1031.538 kb on - strand, within ABIE41_RS04960 at 1031.538 kb on - strand, within ABIE41_RS04960 at 1031.538 kb on - strand, within ABIE41_RS04960 at 1031.538 kb on - strand, within ABIE41_RS04960 at 1031.538 kb on - strand, within ABIE41_RS04960 at 1031.538 kb on - strand, within ABIE41_RS04960 at 1031.538 kb on - strand, within ABIE41_RS04960 at 1031.777 kb on + strand, within ABIE41_RS04960 at 1031.777 kb on + strand, within ABIE41_RS04960 at 1031.777 kb on + strand, within ABIE41_RS04960 at 1031.778 kb on - strand, within ABIE41_RS04960 at 1031.924 kb on + strand, within ABIE41_RS04960 at 1032.228 kb on - strand, within ABIE41_RS04960 at 1032.418 kb on + strand, within ABIE41_RS04960 at 1032.419 kb on - strand, within ABIE41_RS04960 at 1032.769 kb on + strand, within ABIE41_RS04960 at 1032.769 kb on + strand, within ABIE41_RS04960 at 1032.769 kb on + strand, within ABIE41_RS04960 at 1032.770 kb on - strand, within ABIE41_RS04960
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 1,030,262 + ABIE41_RS04950 0.61 +0.3 1,030,262 + ABIE41_RS04950 0.61 +1.0 1,030,433 + -1.2 1,030,691 + ABIE41_RS04955 0.22 -1.1 1,030,691 + ABIE41_RS04955 0.22 +0.6 1,031,017 - +1.9 1,031,258 + -0.7 1,031,258 + +1.1 1,031,259 - -0.0 1,031,259 - -0.6 1,031,259 - -0.3 1,031,259 - -0.1 1,031,259 - -0.3 1,031,369 + +0.8 1,031,369 + +1.1 1,031,369 + +1.0 1,031,537 + ABIE41_RS04960 0.19 -0.0 1,031,537 + ABIE41_RS04960 0.19 +0.0 1,031,537 + ABIE41_RS04960 0.19 +0.3 1,031,537 + ABIE41_RS04960 0.19 +0.8 1,031,537 + ABIE41_RS04960 0.19 -0.9 1,031,537 + ABIE41_RS04960 0.19 -0.2 1,031,537 + ABIE41_RS04960 0.19 -0.4 1,031,537 + ABIE41_RS04960 0.19 -1.0 1,031,537 + ABIE41_RS04960 0.19 -0.4 1,031,537 + ABIE41_RS04960 0.19 -1.3 1,031,538 - ABIE41_RS04960 0.19 +0.0 1,031,538 - ABIE41_RS04960 0.19 +0.1 1,031,538 - ABIE41_RS04960 0.19 +0.9 1,031,538 - ABIE41_RS04960 0.19 +0.0 1,031,538 - ABIE41_RS04960 0.19 +0.3 1,031,538 - ABIE41_RS04960 0.19 +0.4 1,031,538 - ABIE41_RS04960 0.19 +0.1 1,031,538 - ABIE41_RS04960 0.19 -0.2 1,031,777 + ABIE41_RS04960 0.31 -1.6 1,031,777 + ABIE41_RS04960 0.31 -0.0 1,031,777 + ABIE41_RS04960 0.31 -0.3 1,031,778 - ABIE41_RS04960 0.31 +0.1 1,031,924 + ABIE41_RS04960 0.39 +0.1 1,032,228 - ABIE41_RS04960 0.54 -0.6 1,032,418 + ABIE41_RS04960 0.64 +0.3 1,032,419 - ABIE41_RS04960 0.64 -0.3 1,032,769 + ABIE41_RS04960 0.82 -1.0 1,032,769 + ABIE41_RS04960 0.82 +2.8 1,032,769 + ABIE41_RS04960 0.82 -0.4 1,032,770 - ABIE41_RS04960 0.82 -0.3
Or see this region's nucleotide sequence