Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS24150 and ABIE41_RS24155 overlap by 4 nucleotides ABIE41_RS24155 and ABIE41_RS24160 are separated by 349 nucleotides ABIE41_RS24160 and ABIE41_RS24165 are separated by 358 nucleotides
ABIE41_RS24150: ABIE41_RS24150 - TRAP transporter large permease subunit, at 4,985,906 to 4,987,189
_RS24150
ABIE41_RS24155: ABIE41_RS24155 - TRAP transporter small permease, at 4,987,186 to 4,987,731
_RS24155
ABIE41_RS24160: ABIE41_RS24160 - methyl-accepting chemotaxis protein, at 4,988,081 to 4,990,174
_RS24160
ABIE41_RS24165: ABIE41_RS24165 - methyl-accepting chemotaxis protein, at 4,990,533 to 4,993,217
_RS24165
Position (kb) 4988
4989
4990
4991 Strain fitness (log2 ratio) -2
-1
0
1 at 4987.349 kb on + strand, within ABIE41_RS24155 at 4987.349 kb on + strand, within ABIE41_RS24155 at 4987.349 kb on + strand, within ABIE41_RS24155 at 4987.350 kb on - strand, within ABIE41_RS24155 at 4987.350 kb on - strand, within ABIE41_RS24155 at 4987.351 kb on + strand, within ABIE41_RS24155 at 4987.366 kb on + strand, within ABIE41_RS24155 at 4987.367 kb on - strand, within ABIE41_RS24155 at 4987.367 kb on - strand, within ABIE41_RS24155 at 4987.631 kb on + strand, within ABIE41_RS24155 at 4987.631 kb on + strand, within ABIE41_RS24155 at 4987.631 kb on + strand, within ABIE41_RS24155 at 4987.632 kb on - strand, within ABIE41_RS24155 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.673 kb on + strand, within ABIE41_RS24160 at 4989.805 kb on - strand, within ABIE41_RS24160 at 4989.805 kb on - strand, within ABIE41_RS24160 at 4989.825 kb on + strand, within ABIE41_RS24160 at 4989.826 kb on - strand, within ABIE41_RS24160 at 4989.826 kb on - strand, within ABIE41_RS24160 at 4989.928 kb on - strand, within ABIE41_RS24160 at 4989.955 kb on + strand, within ABIE41_RS24160 at 4989.955 kb on + strand, within ABIE41_RS24160 at 4989.956 kb on - strand, within ABIE41_RS24160 at 4989.956 kb on - strand, within ABIE41_RS24160 at 4990.069 kb on + strand at 4990.069 kb on + strand at 4990.069 kb on + strand at 4990.070 kb on - strand at 4990.070 kb on - strand at 4990.070 kb on - strand at 4990.070 kb on - strand at 4990.070 kb on - strand at 4990.084 kb on - strand at 4991.094 kb on + strand, within ABIE41_RS24165 at 4991.094 kb on + strand, within ABIE41_RS24165 at 4991.095 kb on - strand, within ABIE41_RS24165
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 4,987,349 + ABIE41_RS24155 0.30 -1.7 4,987,349 + ABIE41_RS24155 0.30 -0.6 4,987,349 + ABIE41_RS24155 0.30 -0.3 4,987,350 - ABIE41_RS24155 0.30 +0.7 4,987,350 - ABIE41_RS24155 0.30 -0.5 4,987,351 + ABIE41_RS24155 0.30 +0.2 4,987,366 + ABIE41_RS24155 0.33 -0.4 4,987,367 - ABIE41_RS24155 0.33 +0.4 4,987,367 - ABIE41_RS24155 0.33 -1.0 4,987,631 + ABIE41_RS24155 0.82 +0.1 4,987,631 + ABIE41_RS24155 0.82 -1.4 4,987,631 + ABIE41_RS24155 0.82 -0.6 4,987,632 - ABIE41_RS24155 0.82 -0.4 4,989,612 + ABIE41_RS24160 0.73 -1.3 4,989,612 + ABIE41_RS24160 0.73 -0.0 4,989,612 + ABIE41_RS24160 0.73 +0.6 4,989,612 + ABIE41_RS24160 0.73 -0.5 4,989,612 + ABIE41_RS24160 0.73 +1.1 4,989,612 + ABIE41_RS24160 0.73 -0.3 4,989,612 + ABIE41_RS24160 0.73 +0.3 4,989,613 - ABIE41_RS24160 0.73 -1.2 4,989,613 - ABIE41_RS24160 0.73 +0.1 4,989,613 - ABIE41_RS24160 0.73 -0.5 4,989,613 - ABIE41_RS24160 0.73 -0.1 4,989,613 - ABIE41_RS24160 0.73 +1.4 4,989,613 - ABIE41_RS24160 0.73 +0.7 4,989,613 - ABIE41_RS24160 0.73 +0.1 4,989,613 - ABIE41_RS24160 0.73 +0.3 4,989,613 - ABIE41_RS24160 0.73 +0.3 4,989,673 + ABIE41_RS24160 0.76 +0.2 4,989,805 - ABIE41_RS24160 0.82 -0.1 4,989,805 - ABIE41_RS24160 0.82 +0.3 4,989,825 + ABIE41_RS24160 0.83 -0.1 4,989,826 - ABIE41_RS24160 0.83 +0.3 4,989,826 - ABIE41_RS24160 0.83 +0.0 4,989,928 - ABIE41_RS24160 0.88 -0.3 4,989,955 + ABIE41_RS24160 0.89 +0.3 4,989,955 + ABIE41_RS24160 0.89 +1.0 4,989,956 - ABIE41_RS24160 0.90 -0.3 4,989,956 - ABIE41_RS24160 0.90 -1.9 4,990,069 + +0.4 4,990,069 + -0.5 4,990,069 + +0.4 4,990,070 - -0.2 4,990,070 - +0.3 4,990,070 - -1.1 4,990,070 - -0.6 4,990,070 - -0.0 4,990,084 - -0.3 4,991,094 + ABIE41_RS24165 0.21 +0.4 4,991,094 + ABIE41_RS24165 0.21 +0.2 4,991,095 - ABIE41_RS24165 0.21 -0.6
Or see this region's nucleotide sequence