Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS24150 and ABIE41_RS24155 overlap by 4 nucleotides ABIE41_RS24155 and ABIE41_RS24160 are separated by 349 nucleotides
ABIE41_RS24150: ABIE41_RS24150 - TRAP transporter large permease subunit, at 4,985,906 to 4,987,189
_RS24150
ABIE41_RS24155: ABIE41_RS24155 - TRAP transporter small permease, at 4,987,186 to 4,987,731
_RS24155
ABIE41_RS24160: ABIE41_RS24160 - methyl-accepting chemotaxis protein, at 4,988,081 to 4,990,174
_RS24160
Position (kb) 4987
4988 Strain fitness (log2 ratio) -1
0
1
2 at 4986.255 kb on + strand, within ABIE41_RS24150 at 4986.259 kb on - strand, within ABIE41_RS24150 at 4986.433 kb on + strand, within ABIE41_RS24150 at 4986.434 kb on - strand, within ABIE41_RS24150 at 4986.450 kb on + strand, within ABIE41_RS24150 at 4986.451 kb on - strand, within ABIE41_RS24150 at 4986.451 kb on - strand, within ABIE41_RS24150 at 4986.621 kb on + strand, within ABIE41_RS24150 at 4986.621 kb on + strand, within ABIE41_RS24150 at 4986.621 kb on + strand, within ABIE41_RS24150 at 4986.621 kb on + strand, within ABIE41_RS24150 at 4986.621 kb on + strand, within ABIE41_RS24150 at 4986.622 kb on - strand, within ABIE41_RS24150 at 4986.622 kb on - strand, within ABIE41_RS24150 at 4986.622 kb on - strand, within ABIE41_RS24150 at 4986.622 kb on - strand, within ABIE41_RS24150 at 4986.622 kb on - strand, within ABIE41_RS24150 at 4986.622 kb on - strand, within ABIE41_RS24150 at 4987.349 kb on + strand, within ABIE41_RS24155 at 4987.349 kb on + strand, within ABIE41_RS24155 at 4987.349 kb on + strand, within ABIE41_RS24155 at 4987.350 kb on - strand, within ABIE41_RS24155 at 4987.350 kb on - strand, within ABIE41_RS24155 at 4987.351 kb on + strand, within ABIE41_RS24155 at 4987.366 kb on + strand, within ABIE41_RS24155 at 4987.367 kb on - strand, within ABIE41_RS24155 at 4987.367 kb on - strand, within ABIE41_RS24155 at 4987.631 kb on + strand, within ABIE41_RS24155 at 4987.631 kb on + strand, within ABIE41_RS24155 at 4987.631 kb on + strand, within ABIE41_RS24155 at 4987.632 kb on - strand, within ABIE41_RS24155
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 4,986,255 + ABIE41_RS24150 0.27 -1.2 4,986,259 - ABIE41_RS24150 0.27 -0.6 4,986,433 + ABIE41_RS24150 0.41 -0.8 4,986,434 - ABIE41_RS24150 0.41 -0.9 4,986,450 + ABIE41_RS24150 0.42 +0.9 4,986,451 - ABIE41_RS24150 0.42 -0.1 4,986,451 - ABIE41_RS24150 0.42 +0.3 4,986,621 + ABIE41_RS24150 0.56 +2.1 4,986,621 + ABIE41_RS24150 0.56 +0.2 4,986,621 + ABIE41_RS24150 0.56 +0.0 4,986,621 + ABIE41_RS24150 0.56 -1.3 4,986,621 + ABIE41_RS24150 0.56 -0.7 4,986,622 - ABIE41_RS24150 0.56 -0.1 4,986,622 - ABIE41_RS24150 0.56 -0.3 4,986,622 - ABIE41_RS24150 0.56 +0.4 4,986,622 - ABIE41_RS24150 0.56 -0.3 4,986,622 - ABIE41_RS24150 0.56 -0.4 4,986,622 - ABIE41_RS24150 0.56 -0.1 4,987,349 + ABIE41_RS24155 0.30 -1.7 4,987,349 + ABIE41_RS24155 0.30 -0.6 4,987,349 + ABIE41_RS24155 0.30 -0.3 4,987,350 - ABIE41_RS24155 0.30 +0.7 4,987,350 - ABIE41_RS24155 0.30 -0.5 4,987,351 + ABIE41_RS24155 0.30 +0.2 4,987,366 + ABIE41_RS24155 0.33 -0.4 4,987,367 - ABIE41_RS24155 0.33 +0.4 4,987,367 - ABIE41_RS24155 0.33 -1.0 4,987,631 + ABIE41_RS24155 0.82 +0.1 4,987,631 + ABIE41_RS24155 0.82 -1.4 4,987,631 + ABIE41_RS24155 0.82 -0.6 4,987,632 - ABIE41_RS24155 0.82 -0.4
Or see this region's nucleotide sequence