Strain Fitness in Bosea sp. OAE506 around ABIE41_RS24090

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS24080 and ABIE41_RS24085 are separated by 79 nucleotidesABIE41_RS24085 and ABIE41_RS24090 are separated by 116 nucleotidesABIE41_RS24090 and ABIE41_RS24095 are separated by 122 nucleotidesABIE41_RS24095 and ABIE41_RS24100 are separated by 4 nucleotides ABIE41_RS24080: ABIE41_RS24080 - DUF6460 domain-containing protein, at 4,972,610 to 4,972,879 _RS24080 ABIE41_RS24085: ABIE41_RS24085 - response regulator transcription factor, at 4,972,959 to 4,973,639 _RS24085 ABIE41_RS24090: ABIE41_RS24090 - cisplatin damage response ATP-dependent DNA ligase, at 4,973,756 to 4,975,393 _RS24090 ABIE41_RS24095: ABIE41_RS24095 - SGNH/GDSL hydrolase family protein, at 4,975,516 to 4,976,283 _RS24095 ABIE41_RS24100: ABIE41_RS24100 - ligase-associated DNA damage response exonuclease, at 4,976,288 to 4,977,370 _RS24100 Position (kb) 4973 4974 4975 4976Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4973.985 kb on + strand, within ABIE41_RS24090at 4973.985 kb on + strand, within ABIE41_RS24090at 4973.985 kb on + strand, within ABIE41_RS24090at 4973.985 kb on + strand, within ABIE41_RS24090at 4973.986 kb on - strand, within ABIE41_RS24090at 4973.986 kb on - strand, within ABIE41_RS24090at 4973.986 kb on - strand, within ABIE41_RS24090at 4973.986 kb on - strand, within ABIE41_RS24090at 4973.986 kb on - strand, within ABIE41_RS24090at 4974.102 kb on + strand, within ABIE41_RS24090at 4974.103 kb on - strand, within ABIE41_RS24090at 4974.138 kb on + strand, within ABIE41_RS24090at 4974.138 kb on + strand, within ABIE41_RS24090at 4974.138 kb on + strand, within ABIE41_RS24090at 4974.138 kb on + strand, within ABIE41_RS24090at 4974.138 kb on + strand, within ABIE41_RS24090at 4974.138 kb on + strand, within ABIE41_RS24090at 4974.138 kb on + strand, within ABIE41_RS24090at 4974.138 kb on + strand, within ABIE41_RS24090at 4974.138 kb on + strand, within ABIE41_RS24090at 4974.139 kb on - strand, within ABIE41_RS24090at 4974.139 kb on - strand, within ABIE41_RS24090at 4974.139 kb on - strand, within ABIE41_RS24090at 4974.139 kb on - strand, within ABIE41_RS24090at 4974.139 kb on - strand, within ABIE41_RS24090at 4974.214 kb on - strand, within ABIE41_RS24090at 4974.214 kb on - strand, within ABIE41_RS24090at 4974.451 kb on - strand, within ABIE41_RS24090at 4974.864 kb on + strand, within ABIE41_RS24090at 4974.865 kb on - strand, within ABIE41_RS24090at 4974.865 kb on - strand, within ABIE41_RS24090at 4975.167 kb on + strand, within ABIE41_RS24090at 4975.167 kb on + strand, within ABIE41_RS24090at 4975.167 kb on + strand, within ABIE41_RS24090at 4975.167 kb on + strand, within ABIE41_RS24090at 4975.167 kb on + strand, within ABIE41_RS24090at 4975.167 kb on + strand, within ABIE41_RS24090at 4975.167 kb on + strand, within ABIE41_RS24090at 4975.168 kb on - strand, within ABIE41_RS24090at 4975.168 kb on - strand, within ABIE41_RS24090at 4975.168 kb on - strand, within ABIE41_RS24090at 4975.168 kb on - strand, within ABIE41_RS24090at 4975.168 kb on - strand, within ABIE41_RS24090at 4975.168 kb on - strand, within ABIE41_RS24090at 4975.173 kb on + strand, within ABIE41_RS24090at 4975.173 kb on + strand, within ABIE41_RS24090at 4975.173 kb on + strand, within ABIE41_RS24090at 4975.173 kb on + strand, within ABIE41_RS24090at 4975.174 kb on - strand, within ABIE41_RS24090at 4975.314 kb on + strandat 4975.314 kb on + strandat 4975.315 kb on - strandat 4975.356 kb on + strandat 4975.356 kb on + strandat 4975.357 kb on - strandat 4975.490 kb on + strandat 4975.491 kb on - strandat 4975.522 kb on - strandat 4975.742 kb on - strand, within ABIE41_RS24095at 4976.015 kb on - strand, within ABIE41_RS24095at 4976.015 kb on - strand, within ABIE41_RS24095at 4976.053 kb on + strand, within ABIE41_RS24095at 4976.053 kb on + strand, within ABIE41_RS24095at 4976.053 kb on + strand, within ABIE41_RS24095at 4976.053 kb on + strand, within ABIE41_RS24095at 4976.054 kb on - strand, within ABIE41_RS24095at 4976.054 kb on - strand, within ABIE41_RS24095at 4976.184 kb on + strand, within ABIE41_RS24095at 4976.184 kb on + strand, within ABIE41_RS24095at 4976.185 kb on - strand, within ABIE41_RS24095at 4976.185 kb on - strand, within ABIE41_RS24095at 4976.185 kb on - strand, within ABIE41_RS24095at 4976.185 kb on - strand, within ABIE41_RS24095at 4976.281 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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4,973,985 + ABIE41_RS24090 0.14 -0.0
4,973,985 + ABIE41_RS24090 0.14 -2.9
4,973,985 + ABIE41_RS24090 0.14 -0.9
4,973,985 + ABIE41_RS24090 0.14 -0.2
4,973,986 - ABIE41_RS24090 0.14 +0.4
4,973,986 - ABIE41_RS24090 0.14 -0.3
4,973,986 - ABIE41_RS24090 0.14 -0.4
4,973,986 - ABIE41_RS24090 0.14 +0.5
4,973,986 - ABIE41_RS24090 0.14 -1.1
4,974,102 + ABIE41_RS24090 0.21 +0.5
4,974,103 - ABIE41_RS24090 0.21 -0.0
4,974,138 + ABIE41_RS24090 0.23 +1.2
4,974,138 + ABIE41_RS24090 0.23 +0.1
4,974,138 + ABIE41_RS24090 0.23 +0.0
4,974,138 + ABIE41_RS24090 0.23 -0.3
4,974,138 + ABIE41_RS24090 0.23 +0.2
4,974,138 + ABIE41_RS24090 0.23 -0.4
4,974,138 + ABIE41_RS24090 0.23 +0.0
4,974,138 + ABIE41_RS24090 0.23 -0.7
4,974,138 + ABIE41_RS24090 0.23 -0.3
4,974,139 - ABIE41_RS24090 0.23 +0.0
4,974,139 - ABIE41_RS24090 0.23 +0.1
4,974,139 - ABIE41_RS24090 0.23 -0.1
4,974,139 - ABIE41_RS24090 0.23 +1.0
4,974,139 - ABIE41_RS24090 0.23 +0.1
4,974,214 - ABIE41_RS24090 0.28 -0.3
4,974,214 - ABIE41_RS24090 0.28 +0.3
4,974,451 - ABIE41_RS24090 0.42 -0.5
4,974,864 + ABIE41_RS24090 0.68 -2.6
4,974,865 - ABIE41_RS24090 0.68 -0.4
4,974,865 - ABIE41_RS24090 0.68 -0.6
4,975,167 + ABIE41_RS24090 0.86 +1.9
4,975,167 + ABIE41_RS24090 0.86 -0.5
4,975,167 + ABIE41_RS24090 0.86 +0.0
4,975,167 + ABIE41_RS24090 0.86 -0.2
4,975,167 + ABIE41_RS24090 0.86 -0.3
4,975,167 + ABIE41_RS24090 0.86 +0.5
4,975,167 + ABIE41_RS24090 0.86 -1.3
4,975,168 - ABIE41_RS24090 0.86 +1.3
4,975,168 - ABIE41_RS24090 0.86 +0.0
4,975,168 - ABIE41_RS24090 0.86 +0.2
4,975,168 - ABIE41_RS24090 0.86 -0.9
4,975,168 - ABIE41_RS24090 0.86 -0.4
4,975,168 - ABIE41_RS24090 0.86 -0.2
4,975,173 + ABIE41_RS24090 0.87 +0.8
4,975,173 + ABIE41_RS24090 0.87 -0.7
4,975,173 + ABIE41_RS24090 0.87 -1.0
4,975,173 + ABIE41_RS24090 0.87 +1.2
4,975,174 - ABIE41_RS24090 0.87 -0.5
4,975,314 + +0.7
4,975,314 + -0.2
4,975,315 - +0.4
4,975,356 + +0.5
4,975,356 + +0.3
4,975,357 - +0.4
4,975,490 + -0.2
4,975,491 - -0.7
4,975,522 - -0.7
4,975,742 - ABIE41_RS24095 0.29 -0.1
4,976,015 - ABIE41_RS24095 0.65 -0.2
4,976,015 - ABIE41_RS24095 0.65 +0.7
4,976,053 + ABIE41_RS24095 0.70 +0.7
4,976,053 + ABIE41_RS24095 0.70 +0.2
4,976,053 + ABIE41_RS24095 0.70 +1.0
4,976,053 + ABIE41_RS24095 0.70 +0.5
4,976,054 - ABIE41_RS24095 0.70 +0.3
4,976,054 - ABIE41_RS24095 0.70 -0.3
4,976,184 + ABIE41_RS24095 0.87 +0.2
4,976,184 + ABIE41_RS24095 0.87 +0.0
4,976,185 - ABIE41_RS24095 0.87 -0.2
4,976,185 - ABIE41_RS24095 0.87 -1.3
4,976,185 - ABIE41_RS24095 0.87 +0.5
4,976,185 - ABIE41_RS24095 0.87 +0.4
4,976,281 + -0.5

Or see this region's nucleotide sequence