Strain Fitness in Bosea sp. OAE506 around ABIE41_RS10310

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
2,119,867	+		ABIE41_RS10305	0.35	+0.0
2,119,867	+		ABIE41_RS10305	0.35	-0.3
2,119,867	+		ABIE41_RS10305	0.35	-1.7
2,119,868	-		ABIE41_RS10305	0.35	-0.3
2,119,888	+		ABIE41_RS10305	0.37	+0.5
2,119,889	-		ABIE41_RS10305	0.37	+0.3
2,119,889	-		ABIE41_RS10305	0.37	+1.1
2,119,889	-		ABIE41_RS10305	0.37	+0.1
2,119,889	-		ABIE41_RS10305	0.37	-0.2
2,119,918	+		ABIE41_RS10305	0.39	-0.3
2,119,919	-		ABIE41_RS10305	0.39	-0.8
2,119,933	+		ABIE41_RS10305	0.40	-0.2
2,119,934	-		ABIE41_RS10305	0.40	-1.4
2,120,122	+		ABIE41_RS10305	0.55	-0.1
2,120,122	+		ABIE41_RS10305	0.55	-1.3
2,120,123	-		ABIE41_RS10305	0.55	+1.4
2,120,123	-		ABIE41_RS10305	0.55	-0.8
2,120,185	+		ABIE41_RS10305	0.60	-0.1
2,120,185	+		ABIE41_RS10305	0.60	-0.2
2,120,267	-		ABIE41_RS10305	0.67	-0.3
2,120,353	+		ABIE41_RS10305	0.74	-0.2
2,120,354	-		ABIE41_RS10305	0.74	+0.1
2,120,383	+		ABIE41_RS10305	0.76	-0.9
2,120,383	+		ABIE41_RS10305	0.76	+1.4
2,120,383	+		ABIE41_RS10305	0.76	+0.2
2,120,383	+		ABIE41_RS10305	0.76	+0.1
2,120,383	+		ABIE41_RS10305	0.76	-0.7
2,120,383	+		ABIE41_RS10305	0.76	-0.1
2,120,383	+		ABIE41_RS10305	0.76	-0.4
2,120,384	-		ABIE41_RS10305	0.76	+0.1
2,120,384	-		ABIE41_RS10305	0.76	-1.7
2,120,384	-		ABIE41_RS10305	0.76	+0.4
2,120,384	-		ABIE41_RS10305	0.76	-0.4
2,120,384	-		ABIE41_RS10305	0.76	-0.1
2,120,486	-		ABIE41_RS10305	0.84	-0.3
2,120,587	+				-1.7
2,120,587	+				+0.1
2,120,587	+				-0.6
2,120,588	-				-1.0
2,120,588	-				+0.4
2,120,588	-				-0.6
2,120,596	+				+0.7
2,120,597	-				+0.8
2,120,597	-				+0.6
2,120,707	+				-0.4
2,120,773	-				+0.1
2,121,193	-		ABIE41_RS10310	0.14	-0.2
2,121,258	+		ABIE41_RS10310	0.15	+0.4
2,121,258	+		ABIE41_RS10310	0.15	+0.4
2,121,576	+		ABIE41_RS10310	0.24	+0.1
2,121,577	-		ABIE41_RS10310	0.24	-0.8
2,121,612	+		ABIE41_RS10310	0.25	-0.2
2,121,612	+		ABIE41_RS10310	0.25	+0.5
2,121,613	-		ABIE41_RS10310	0.25	-0.2
2,121,613	-		ABIE41_RS10310	0.25	-0.7
2,121,613	-		ABIE41_RS10310	0.25	-1.1
2,121,651	+		ABIE41_RS10310	0.26	-0.5
2,121,652	-		ABIE41_RS10310	0.27	+0.2
2,121,813	+		ABIE41_RS10310	0.31	+0.9
2,121,813	+		ABIE41_RS10310	0.31	-0.1
2,121,813	+		ABIE41_RS10310	0.31	+0.1
2,121,813	+		ABIE41_RS10310	0.31	-0.6
2,121,813	+		ABIE41_RS10310	0.31	-0.1
2,121,814	-		ABIE41_RS10310	0.31	+0.4
2,121,814	-		ABIE41_RS10310	0.31	-0.1
2,121,814	-		ABIE41_RS10310	0.31	+0.1
2,121,814	-		ABIE41_RS10310	0.31	-1.0
2,121,814	-		ABIE41_RS10310	0.31	+0.0
2,121,814	-		ABIE41_RS10310	0.31	-0.9
2,121,889	+		ABIE41_RS10310	0.33	-1.7
2,122,161	-		ABIE41_RS10310	0.41	+0.1
2,122,344	+		ABIE41_RS10310	0.46	+0.2
2,122,344	+		ABIE41_RS10310	0.46	+0.1
2,122,345	-		ABIE41_RS10310	0.46	-0.2
2,122,729	-		ABIE41_RS10310	0.57	-1.1
2,122,926	+		ABIE41_RS10310	0.62	-0.6
2,122,927	-		ABIE41_RS10310	0.62	+0.3
2,123,253	+		ABIE41_RS10310	0.72	+0.1
2,123,253	+		ABIE41_RS10310	0.72	-1.1
2,123,254	-		ABIE41_RS10310	0.72	-0.6
2,123,476	+		ABIE41_RS10310	0.78	-0.3
2,123,476	+		ABIE41_RS10310	0.78	+0.3
2,123,478	+		ABIE41_RS10310	0.78	+0.4
2,123,479	-		ABIE41_RS10310	0.78	-0.1
2,123,479	-		ABIE41_RS10310	0.78	+0.9
2,123,574	+		ABIE41_RS10310	0.81	-0.2
2,123,574	+		ABIE41_RS10310	0.81	-0.8
2,123,574	+		ABIE41_RS10310	0.81	+0.0
2,123,574	+		ABIE41_RS10310	0.81	+0.0
2,123,575	-		ABIE41_RS10310	0.81	-0.1
2,123,575	-		ABIE41_RS10310	0.81	+0.1
2,123,575	-		ABIE41_RS10310	0.81	-0.1
2,123,652	+		ABIE41_RS10310	0.83	+0.4
2,123,653	-		ABIE41_RS10310	0.83	-0.6
2,123,724	+		ABIE41_RS10310	0.85	+0.7
2,123,724	+		ABIE41_RS10310	0.85	-1.4
2,123,724	+		ABIE41_RS10310	0.85	+0.3
2,123,724	+		ABIE41_RS10310	0.85	+0.1
2,123,725	-		ABIE41_RS10310	0.85	-0.3
2,123,725	-		ABIE41_RS10310	0.85	+0.3
2,123,725	-		ABIE41_RS10310	0.85	+0.3
2,123,725	-		ABIE41_RS10310	0.85	-0.3
2,123,848	-		ABIE41_RS10310	0.88	+0.1
2,123,913	+				-0.0
2,123,913	+				-2.3
2,123,913	+				-0.6
2,123,913	+				+0.9
2,123,913	+				+0.0
2,123,914	-				+0.5
2,123,914	-				-1.9
2,123,914	-				+0.3
2,123,914	-				-0.7
2,124,043	-				+0.0
2,124,052	+				-0.7
2,124,053	-				+0.1
2,124,054	+				-0.4
2,124,054	+				-0.1
2,124,054	+				+0.2
2,124,054	+				-0.1
2,124,054	+				-0.4
2,124,054	+				-1.0
2,124,054	+				+0.1
2,124,054	+				+0.4
2,124,055	-				-1.5
2,124,055	-				-0.9
2,124,343	+				-1.4
2,124,343	+				-1.4
2,124,424	-				+0.1
2,124,570	+		ABIE41_RS10315	0.16	+0.9
2,124,571	-		ABIE41_RS10315	0.16	+0.4
2,124,604	-		ABIE41_RS10315	0.21	+2.2
2,124,645	+		ABIE41_RS10315	0.26	+0.6
2,124,646	-		ABIE41_RS10315	0.27	+0.2
2,124,671	-		ABIE41_RS10315	0.30	-0.6
2,124,690	+		ABIE41_RS10315	0.33	+0.9
2,124,690	+		ABIE41_RS10315	0.33	-0.9
2,124,691	-		ABIE41_RS10315	0.33	-0.9
2,124,700	-		ABIE41_RS10315	0.34	-0.6
2,124,780	+		ABIE41_RS10315	0.46	-0.5
2,124,781	-		ABIE41_RS10315	0.46	+0.1
2,124,966	+		ABIE41_RS10315	0.73	+0.4
2,124,967	-		ABIE41_RS10315	0.73	+2.2
2,124,967	-		ABIE41_RS10315	0.73	+1.3
2,125,057	-		ABIE41_RS10315	0.86	+0.1
2,125,218	+				+0.1
2,125,218	+				-0.0
2,125,218	+				-0.4
2,125,218	+				-0.0
2,125,219	-				+1.1
2,125,219	-				-1.4